Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 DGCR5-201ENST00000399539 862 ntBASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 HNRNPA3P1-201ENST00000401429 1139 ntBASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 ACTBP11-201ENST00000436287 1126 ntBASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 TMPRSS11CP-201ENST00000453277 683 ntBASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 HNRNPA3P5-201ENST00000455201 833 ntBASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 ARL16-210ENST00000574938 751 ntTSL 2 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 MIR4259-201ENST00000584466 101 ntBASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 COX11-210ENST00000639671 696 ntBASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 AC018892.3-201ENST00000623986 2499 ntBASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 STRN-202ENST00000379213 2254 ntTSL 5 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 LINC01225-203ENST00000563550 1244 ntBASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 AC103810.3-201ENST00000583567 96 ntBASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 AL450472.2-201ENST00000603663 1156 ntBASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 AL512343.1-201ENST00000605837 169 ntBASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 COQ4-205ENST00000609948 956 ntTSL 2 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.71□□□□□ -0.37
PDLIM3Q53GG5 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 CICP23-201ENST00000605013 2741 ntBASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC12.71□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms