Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.92□□□□□ -0.02
CDH13P55290 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.92□□□□□ -0.02
CDH13P55290 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.92□□□□□ -0.02
CDH13P55290 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH13P55290 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.91□□□□□ -0.02
CDH13P55290 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH13P55290 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH13P55290 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.91□□□□□ -0.02
CDH13P55290 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.91□□□□□ -0.02
CDH13P55290 FAM86GP-201ENST00000448322 971 ntBASIC14.91□□□□□ -0.02
CDH13P55290 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
CDH13P55290 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.91□□□□□ -0.02
CDH13P55290 ZNF890P-202ENST00000530367 1156 ntBASIC14.91□□□□□ -0.02
CDH13P55290 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.91□□□□□ -0.02
CDH13P55290 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.91□□□□□ -0.02
CDH13P55290 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.91□□□□□ -0.02
CDH13P55290 AL158211.3-201ENST00000607385 239 ntBASIC14.91□□□□□ -0.02
CDH13P55290 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH13P55290 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.91□□□□□ -0.02
CDH13P55290 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 AL158212.4-201ENST00000624062 1286 ntBASIC14.91□□□□□ -0.02
CDH13P55290 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CDH13P55290 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH13P55290 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CDH13P55290 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.91□□□□□ -0.02
CDH13P55290 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH13P55290 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CDH13P55290 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.9□□□□□ -0.02
CDH13P55290 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.9□□□□□ -0.02
CDH13P55290 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CDH13P55290 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.9□□□□□ -0.02
CDH13P55290 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CDH13P55290 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CDH13P55290 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 MIR943-201ENST00000401286 94 ntBASIC14.9□□□□□ -0.02
CDH13P55290 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH13P55290 TSSK5P-201ENST00000423978 907 ntBASIC14.9□□□□□ -0.02
CDH13P55290 AC114501.2-201ENST00000439631 535 ntBASIC14.9□□□□□ -0.02
CDH13P55290 AL589987.1-201ENST00000453380 819 ntBASIC14.9□□□□□ -0.02
CDH13P55290 AC067863.1-201ENST00000494933 530 ntBASIC14.9□□□□□ -0.02
CDH13P55290 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH13P55290 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH13P55290 DUX4L27-201ENST00000554796 1261 ntBASIC14.9□□□□□ -0.02
CDH13P55290 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.9□□□□□ -0.02
CDH13P55290 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH13P55290 AC092337.1-201ENST00000568699 1129 ntBASIC14.9□□□□□ -0.02
CDH13P55290 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.9□□□□□ -0.02
CDH13P55290 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.9□□□□□ -0.02
CDH13P55290 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.9□□□□□ -0.02
CDH13P55290 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
CDH13P55290 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CDH13P55290 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms