Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.47■□□□□ 0.39
CTCFP49711 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.47■□□□□ 0.39
CTCFP49711 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CTCFP49711 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.47■□□□□ 0.39
CTCFP49711 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CTCFP49711 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 AQP7P5-201ENST00000428759 1049 ntBASIC17.47■□□□□ 0.39
CTCFP49711 AQP7P4-201ENST00000447083 1042 ntBASIC17.47■□□□□ 0.39
CTCFP49711 AQP7P2-201ENST00000453967 1041 ntBASIC17.47■□□□□ 0.39
CTCFP49711 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.47■□□□□ 0.39
CTCFP49711 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC17.47■□□□□ 0.39
CTCFP49711 MIR5001-201ENST00000580185 100 ntBASIC17.47■□□□□ 0.39
CTCFP49711 RN7SL470P-201ENST00000583069 259 ntBASIC17.47■□□□□ 0.39
CTCFP49711 MIR4522-201ENST00000584932 87 ntBASIC17.47■□□□□ 0.39
CTCFP49711 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC17.47■□□□□ 0.39
CTCFP49711 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC17.47■□□□□ 0.39
CTCFP49711 AC006548.2-201ENST00000605217 529 ntBASIC17.47■□□□□ 0.39
CTCFP49711 GPR39-203ENST00000622084 900 ntTSL 5 BASIC17.47■□□□□ 0.39
CTCFP49711 AQP7P3-201ENST00000624547 1041 ntBASIC17.47■□□□□ 0.39
CTCFP49711 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC17.47■□□□□ 0.39
CTCFP49711 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.47■□□□□ 0.39
CTCFP49711 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CTCFP49711 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CTCFP49711 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.47■□□□□ 0.39
CTCFP49711 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CTCFP49711 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CTCFP49711 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CTCFP49711 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CTCFP49711 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.46■□□□□ 0.39
CTCFP49711 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.46■□□□□ 0.39
CTCFP49711 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.46■□□□□ 0.39
CTCFP49711 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.46■□□□□ 0.39
CTCFP49711 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 KRT8P21-201ENST00000430398 1491 ntBASIC17.46■□□□□ 0.39
CTCFP49711 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.46■□□□□ 0.39
CTCFP49711 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 AL583805.1-201ENST00000391389 531 ntBASIC17.46■□□□□ 0.39
CTCFP49711 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
CTCFP49711 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC17.46■□□□□ 0.39
CTCFP49711 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC17.46■□□□□ 0.39
CTCFP49711 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC17.46■□□□□ 0.39
CTCFP49711 HNRNPA1P42-201ENST00000458678 957 ntBASIC17.46■□□□□ 0.39
CTCFP49711 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC17.46■□□□□ 0.39
CTCFP49711 AC093752.3-201ENST00000567343 901 ntBASIC17.46■□□□□ 0.39
CTCFP49711 AC008805.1-201ENST00000590892 364 ntBASIC17.46■□□□□ 0.39
CTCFP49711 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC17.46■□□□□ 0.39
CTCFP49711 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.46■□□□□ 0.39
CTCFP49711 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC17.46■□□□□ 0.39
CTCFP49711 LINC01783-202ENST00000614408 828 ntBASIC17.46■□□□□ 0.39
CTCFP49711 BX284668.2-205ENST00000619677 828 ntBASIC17.46■□□□□ 0.39
CTCFP49711 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.46■□□□□ 0.39
CTCFP49711 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CTCFP49711 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CTCFP49711 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.45■□□□□ 0.38
CTCFP49711 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.45■□□□□ 0.38
CTCFP49711 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CTCFP49711 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CTCFP49711 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC17.45■□□□□ 0.38
CTCFP49711 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC17.45■□□□□ 0.38
CTCFP49711 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC17.45■□□□□ 0.38
CTCFP49711 MIR3180-2-201ENST00000581748 88 ntBASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms