Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC12.53□□□□□ -0.4
CDX1P47902 SLC9A3P3-201ENST00000457608 2229 ntBASIC12.53□□□□□ -0.4
CDX1P47902 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC12.53□□□□□ -0.4
CDX1P47902 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CDX1P47902 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CDX1P47902 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC12.52□□□□□ -0.4
CDX1P47902 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CDX1P47902 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
CDX1P47902 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.52□□□□□ -0.4
CDX1P47902 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CDX1P47902 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC12.52□□□□□ -0.4
CDX1P47902 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CDX1P47902 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
CDX1P47902 AC022144.1-201ENST00000602255 1580 ntBASIC12.52□□□□□ -0.4
CDX1P47902 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CDX1P47902 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CDX1P47902 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CDX1P47902 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC12.52□□□□□ -0.4
CDX1P47902 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CDX1P47902 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC12.52□□□□□ -0.4
CDX1P47902 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.4
CDX1P47902 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
CDX1P47902 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CDX1P47902 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.52□□□□□ -0.4
CDX1P47902 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
CDX1P47902 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC12.52□□□□□ -0.41
CDX1P47902 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CDX1P47902 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 AC069224.1-201ENST00000566372 1715 ntBASIC12.52□□□□□ -0.41
CDX1P47902 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
CDX1P47902 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC12.52□□□□□ -0.41
CDX1P47902 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC12.52□□□□□ -0.41
CDX1P47902 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC12.52□□□□□ -0.41
CDX1P47902 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC12.52□□□□□ -0.41
CDX1P47902 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.52□□□□□ -0.41
CDX1P47902 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC12.52□□□□□ -0.41
CDX1P47902 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC12.52□□□□□ -0.41
CDX1P47902 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC12.52□□□□□ -0.41
CDX1P47902 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC12.52□□□□□ -0.41
CDX1P47902 LINC02084-201ENST00000606069 1096 ntBASIC12.52□□□□□ -0.41
CDX1P47902 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
CDX1P47902 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.52□□□□□ -0.41
CDX1P47902 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
CDX1P47902 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12.52□□□□□ -0.41
CDX1P47902 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
CDX1P47902 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.52□□□□□ -0.41
CDX1P47902 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC12.52□□□□□ -0.41
CDX1P47902 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC12.52□□□□□ -0.41
CDX1P47902 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
CDX1P47902 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC12.52□□□□□ -0.41
CDX1P47902 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CDX1P47902 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC12.51□□□□□ -0.41
CDX1P47902 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CDX1P47902 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC12.51□□□□□ -0.41
CDX1P47902 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 HSPA7-201ENST00000445535 1927 ntBASIC12.51□□□□□ -0.41
CDX1P47902 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CDX1P47902 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC12.51□□□□□ -0.41
CDX1P47902 AGAP7P-201ENST00000582299 2062 ntBASIC12.51□□□□□ -0.41
CDX1P47902 AGAP14-201ENST00000624701 2060 ntBASIC12.51□□□□□ -0.41
CDX1P47902 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC12.51□□□□□ -0.41
CDX1P47902 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 AL080243.2-201ENST00000418783 582 ntBASIC12.51□□□□□ -0.41
CDX1P47902 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC12.51□□□□□ -0.41
CDX1P47902 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CDX1P47902 OARD1-208ENST00000469104 704 ntTSL 2 BASIC12.51□□□□□ -0.41
CDX1P47902 ZNF890P-202ENST00000530367 1156 ntBASIC12.51□□□□□ -0.41
CDX1P47902 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CDX1P47902 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC12.51□□□□□ -0.41
CDX1P47902 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms