Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HTTP42858 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HTTP42858 ACTG1P19-201ENST00000418987 1116 ntBASIC16.52■□□□□ 0.23
HTTP42858 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC16.52■□□□□ 0.23
HTTP42858 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
HTTP42858 AC021305.1-201ENST00000520656 1514 ntBASIC16.51■□□□□ 0.23
HTTP42858 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.51■□□□□ 0.23
HTTP42858 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HTTP42858 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC16.51■□□□□ 0.23
HTTP42858 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 BCL2L12P1-201ENST00000508390 733 ntBASIC16.51■□□□□ 0.23
HTTP42858 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC16.51■□□□□ 0.23
HTTP42858 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC16.51■□□□□ 0.23
HTTP42858 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC16.51■□□□□ 0.23
HTTP42858 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.51■□□□□ 0.23
HTTP42858 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HTTP42858 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC16.51■□□□□ 0.23
HTTP42858 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.51■□□□□ 0.23
HTTP42858 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC16.51■□□□□ 0.23
HTTP42858 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC16.51■□□□□ 0.23
HTTP42858 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC16.51■□□□□ 0.23
HTTP42858 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC16.51■□□□□ 0.23
HTTP42858 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC16.51■□□□□ 0.23
HTTP42858 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC16.51■□□□□ 0.23
HTTP42858 AC010632.2-201ENST00000588369 1224 ntBASIC16.51■□□□□ 0.23
HTTP42858 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HTTP42858 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC16.51■□□□□ 0.23
HTTP42858 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HTTP42858 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HTTP42858 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.51■□□□□ 0.23
HTTP42858 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
HTTP42858 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 RN7SL665P-201ENST00000578793 300 ntBASIC16.5■□□□□ 0.23
HTTP42858 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.5■□□□□ 0.23
HTTP42858 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.5■□□□□ 0.23
HTTP42858 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC16.5■□□□□ 0.23
HTTP42858 RHEB-207ENST00000496004 744 ntTSL 2 BASIC16.5■□□□□ 0.23
HTTP42858 CISD2-202ENST00000503643 808 ntTSL 2 BASIC16.5■□□□□ 0.23
HTTP42858 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC16.5■□□□□ 0.23
HTTP42858 MT2A-202ENST00000561491 581 ntTSL 2 BASIC16.5■□□□□ 0.23
HTTP42858 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC16.5■□□□□ 0.23
HTTP42858 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 ZBED1P1-201ENST00000502364 1930 ntBASIC16.5■□□□□ 0.23
HTTP42858 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
HTTP42858 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
HTTP42858 AF274858.1-201ENST00000406288 372 ntBASIC16.5■□□□□ 0.23
HTTP42858 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC16.5■□□□□ 0.23
HTTP42858 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC16.5■□□□□ 0.23
HTTP42858 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 GCOM2-201ENST00000509133 1104 ntBASIC16.5■□□□□ 0.23
HTTP42858 MED11-202ENST00000573708 802 ntTSL 2 BASIC16.5■□□□□ 0.23
HTTP42858 RN7SL357P-201ENST00000581065 298 ntBASIC16.5■□□□□ 0.23
HTTP42858 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms