Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHMT2P34897 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SHMT2P34897 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.92□□□□□ -0.02
SHMT2P34897 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHMT2P34897 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHMT2P34897 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.92□□□□□ -0.02
SHMT2P34897 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SHMT2P34897 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHMT2P34897 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHMT2P34897 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SHMT2P34897 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SHMT2P34897 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHMT2P34897 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
SHMT2P34897 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SHMT2P34897 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SHMT2P34897 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.91□□□□□ -0.02
SHMT2P34897 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.91□□□□□ -0.02
SHMT2P34897 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.91□□□□□ -0.02
SHMT2P34897 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
SHMT2P34897 ACKR1-201ENST00000368121 1240 ntBASIC14.91□□□□□ -0.02
SHMT2P34897 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
SHMT2P34897 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.91□□□□□ -0.02
SHMT2P34897 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SHMT2P34897 AL645937.2-201ENST00000396808 931 ntBASIC14.91□□□□□ -0.02
SHMT2P34897 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.91□□□□□ -0.02
SHMT2P34897 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.91□□□□□ -0.02
SHMT2P34897 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.91□□□□□ -0.02
SHMT2P34897 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
SHMT2P34897 TDH-203ENST00000531764 1110 ntBASIC14.91□□□□□ -0.02
SHMT2P34897 PTP4A1P2-201ENST00000546033 454 ntBASIC14.91□□□□□ -0.02
SHMT2P34897 SAMD11P1-201ENST00000571429 661 ntBASIC14.91□□□□□ -0.02
SHMT2P34897 CLUHP6-201ENST00000580789 941 ntBASIC14.91□□□□□ -0.02
SHMT2P34897 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
SHMT2P34897 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.91□□□□□ -0.02
SHMT2P34897 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.91□□□□□ -0.02
SHMT2P34897 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.91□□□□□ -0.02
SHMT2P34897 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHMT2P34897 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.91□□□□□ -0.02
SHMT2P34897 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.9□□□□□ -0.02
SHMT2P34897 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.9□□□□□ -0.02
SHMT2P34897 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
SHMT2P34897 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.9□□□□□ -0.02
SHMT2P34897 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.9□□□□□ -0.02
SHMT2P34897 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.9□□□□□ -0.02
SHMT2P34897 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.9□□□□□ -0.02
SHMT2P34897 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
SHMT2P34897 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.9□□□□□ -0.02
SHMT2P34897 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.9□□□□□ -0.02
SHMT2P34897 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.9□□□□□ -0.02
SHMT2P34897 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.9□□□□□ -0.02
SHMT2P34897 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.9□□□□□ -0.02
SHMT2P34897 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.9□□□□□ -0.02
SHMT2P34897 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SHMT2P34897 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.9□□□□□ -0.02
SHMT2P34897 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.9□□□□□ -0.02
SHMT2P34897 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.9□□□□□ -0.02
SHMT2P34897 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.9□□□□□ -0.02
SHMT2P34897 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.9□□□□□ -0.02
SHMT2P34897 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.9□□□□□ -0.02
SHMT2P34897 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
SHMT2P34897 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHMT2P34897 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
SHMT2P34897 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.9□□□□□ -0.02
SHMT2P34897 AC093525.8-201ENST00000624099 1342 ntBASIC14.9□□□□□ -0.02
SHMT2P34897 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms