Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC18.52■□□□□ 0.55
COL5A3P25940 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC18.52■□□□□ 0.55
COL5A3P25940 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC18.51■□□□□ 0.55
COL5A3P25940 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.51■□□□□ 0.55
COL5A3P25940 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.51■□□□□ 0.55
COL5A3P25940 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.51■□□□□ 0.55
COL5A3P25940 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.51■□□□□ 0.55
COL5A3P25940 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC18.51■□□□□ 0.55
COL5A3P25940 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC18.51■□□□□ 0.55
COL5A3P25940 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 USP4-203ENST00000415188 1454 ntTSL 3 BASIC18.51■□□□□ 0.55
COL5A3P25940 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC18.51■□□□□ 0.55
COL5A3P25940 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A3P25940 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC18.51■□□□□ 0.55
COL5A3P25940 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC18.51■□□□□ 0.55
COL5A3P25940 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
COL5A3P25940 RN7SL470P-201ENST00000583069 259 ntBASIC18.51■□□□□ 0.55
COL5A3P25940 AC244250.3-201ENST00000620749 366 ntBASIC18.51■□□□□ 0.55
COL5A3P25940 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL5A3P25940 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC18.5■□□□□ 0.55
COL5A3P25940 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
COL5A3P25940 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.5■□□□□ 0.55
COL5A3P25940 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 API5-208ENST00000531273 1868 ntTSL 2 BASIC18.5■□□□□ 0.55
COL5A3P25940 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC18.5■□□□□ 0.55
COL5A3P25940 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
COL5A3P25940 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
COL5A3P25940 PYY2-201ENST00000315776 282 ntBASIC18.5■□□□□ 0.55
COL5A3P25940 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL5A3P25940 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC18.5■□□□□ 0.55
COL5A3P25940 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
COL5A3P25940 CELP-201ENST00000411440 1249 ntTSL 5 BASIC18.5■□□□□ 0.55
COL5A3P25940 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC18.5■□□□□ 0.55
COL5A3P25940 NAA40-205ENST00000539656 577 ntTSL 4 BASIC18.5■□□□□ 0.55
COL5A3P25940 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC18.5■□□□□ 0.55
COL5A3P25940 AC090386.2-201ENST00000623010 1039 ntBASIC18.5■□□□□ 0.55
COL5A3P25940 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
COL5A3P25940 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.5■□□□□ 0.55
COL5A3P25940 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC18.5■□□□□ 0.55
COL5A3P25940 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A3P25940 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL5A3P25940 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC18.49■□□□□ 0.55
COL5A3P25940 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.49■□□□□ 0.55
COL5A3P25940 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL5A3P25940 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.49■□□□□ 0.55
COL5A3P25940 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.49■□□□□ 0.55
COL5A3P25940 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL5A3P25940 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
COL5A3P25940 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC18.49■□□□□ 0.55
COL5A3P25940 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A3P25940 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC18.49■□□□□ 0.55
COL5A3P25940 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC18.49■□□□□ 0.55
COL5A3P25940 AP000322.3-201ENST00000608665 388 ntBASIC18.49■□□□□ 0.55
COL5A3P25940 FO393412.1-201ENST00000619841 382 ntBASIC18.49■□□□□ 0.55
COL5A3P25940 AC138466.4-201ENST00000623965 852 ntBASIC18.49■□□□□ 0.55
COL5A3P25940 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A3P25940 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A3P25940 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
COL5A3P25940 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A3P25940 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC18.49■□□□□ 0.55
COL5A3P25940 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC18.49■□□□□ 0.55
COL5A3P25940 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
COL5A3P25940 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC18.49■□□□□ 0.55
COL5A3P25940 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC18.49■□□□□ 0.55
COL5A3P25940 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A3P25940 PGAM1P12-201ENST00000505622 748 ntBASIC18.49■□□□□ 0.55
COL5A3P25940 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC18.49■□□□□ 0.55
COL5A3P25940 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC18.49■□□□□ 0.55
COL5A3P25940 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC18.49■□□□□ 0.55
COL5A3P25940 AL118516.1-201ENST00000564152 670 ntBASIC18.49■□□□□ 0.55
COL5A3P25940 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC18.49■□□□□ 0.55
COL5A3P25940 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC18.49■□□□□ 0.55
COL5A3P25940 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC18.49■□□□□ 0.55
COL5A3P25940 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A3P25940 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A3P25940 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A3P25940 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms