Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 NORAD-201ENST00000565493 5339 ntBASIC15.98■□□□□ 0.15
BDNFP23560 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.98■□□□□ 0.15
BDNFP23560 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 MIR6799-201ENST00000620297 69 ntBASIC15.98■□□□□ 0.15
BDNFP23560 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.98■□□□□ 0.15
BDNFP23560 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.98■□□□□ 0.15
BDNFP23560 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.98■□□□□ 0.15
BDNFP23560 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
BDNFP23560 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
BDNFP23560 WASH3P-207ENST00000560956 1394 ntBASIC15.98■□□□□ 0.15
BDNFP23560 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
BDNFP23560 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.98■□□□□ 0.15
BDNFP23560 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
BDNFP23560 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.98■□□□□ 0.15
BDNFP23560 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.97■□□□□ 0.15
BDNFP23560 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.97■□□□□ 0.15
BDNFP23560 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.97■□□□□ 0.15
BDNFP23560 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
BDNFP23560 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.97■□□□□ 0.15
BDNFP23560 TUBB1P2-201ENST00000422712 1306 ntBASIC15.97■□□□□ 0.15
BDNFP23560 CLUHP2-201ENST00000426660 1303 ntBASIC15.97■□□□□ 0.15
BDNFP23560 TUBB1P1-201ENST00000503144 1300 ntBASIC15.97■□□□□ 0.15
BDNFP23560 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
BDNFP23560 AC022532.1-201ENST00000624563 1728 ntBASIC15.97■□□□□ 0.15
BDNFP23560 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
BDNFP23560 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.97■□□□□ 0.15
BDNFP23560 MIR1908-201ENST00000410394 80 ntBASIC15.97■□□□□ 0.15
BDNFP23560 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.97■□□□□ 0.15
BDNFP23560 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.97■□□□□ 0.15
BDNFP23560 RN7SL560P-201ENST00000577943 264 ntBASIC15.97■□□□□ 0.15
BDNFP23560 MIR4741-201ENST00000579822 90 ntBASIC15.97■□□□□ 0.15
BDNFP23560 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.97■□□□□ 0.15
BDNFP23560 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.97■□□□□ 0.15
BDNFP23560 OR10B1P-201ENST00000601666 907 ntBASIC15.97■□□□□ 0.15
BDNFP23560 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.97■□□□□ 0.15
BDNFP23560 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.97■□□□□ 0.15
BDNFP23560 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
BDNFP23560 DBET-201ENST00000630918 3363 ntBASIC15.97■□□□□ 0.15
BDNFP23560 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.97■□□□□ 0.15
BDNFP23560 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 AC144831.1-201ENST00000573312 2656 ntBASIC15.97■□□□□ 0.15
BDNFP23560 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.97■□□□□ 0.15
BDNFP23560 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
BDNFP23560 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
BDNFP23560 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
BDNFP23560 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
BDNFP23560 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.96■□□□□ 0.15
BDNFP23560 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 FAM86MP-201ENST00000340703 885 ntBASIC15.96■□□□□ 0.15
BDNFP23560 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.96■□□□□ 0.15
BDNFP23560 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 BRWD1P1-201ENST00000401091 371 ntBASIC15.96■□□□□ 0.15
BDNFP23560 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
BDNFP23560 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
BDNFP23560 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms