Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
MSH4O15457 FKBP4P6-201ENST00000457486 1332 ntBASIC16.97■□□□□ 0.31
MSH4O15457 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.97■□□□□ 0.31
MSH4O15457 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.97■□□□□ 0.31
MSH4O15457 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.97■□□□□ 0.31
MSH4O15457 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
MSH4O15457 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.97■□□□□ 0.31
MSH4O15457 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.97■□□□□ 0.31
MSH4O15457 AC007274.1-201ENST00000439805 662 ntBASIC16.97■□□□□ 0.31
MSH4O15457 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC16.97■□□□□ 0.31
MSH4O15457 DUX4L45-201ENST00000566406 1057 ntBASIC16.97■□□□□ 0.31
MSH4O15457 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC16.97■□□□□ 0.31
MSH4O15457 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.97■□□□□ 0.31
MSH4O15457 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC16.97■□□□□ 0.31
MSH4O15457 AC073413.1-201ENST00000603927 732 ntBASIC16.97■□□□□ 0.31
MSH4O15457 AC138696.2-201ENST00000607376 223 ntBASIC16.97■□□□□ 0.31
MSH4O15457 AL033527.4-201ENST00000641026 673 ntBASIC16.97■□□□□ 0.31
MSH4O15457 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
MSH4O15457 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
MSH4O15457 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
MSH4O15457 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
MSH4O15457 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.97■□□□□ 0.31
MSH4O15457 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH4O15457 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC16.96■□□□□ 0.31
MSH4O15457 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.96■□□□□ 0.31
MSH4O15457 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.96■□□□□ 0.31
MSH4O15457 AC011840.2-201ENST00000563063 1520 ntBASIC16.96■□□□□ 0.31
MSH4O15457 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.96■□□□□ 0.31
MSH4O15457 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
MSH4O15457 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.96■□□□□ 0.31
MSH4O15457 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
MSH4O15457 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.96■□□□□ 0.31
MSH4O15457 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
MSH4O15457 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC16.96■□□□□ 0.31
MSH4O15457 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 YBX1P6-201ENST00000442962 1002 ntBASIC16.96■□□□□ 0.31
MSH4O15457 CNN2P10-201ENST00000443067 918 ntBASIC16.96■□□□□ 0.31
MSH4O15457 COX5BP1-201ENST00000507622 393 ntBASIC16.96■□□□□ 0.31
MSH4O15457 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC16.96■□□□□ 0.31
MSH4O15457 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC16.96■□□□□ 0.31
MSH4O15457 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.96■□□□□ 0.31
MSH4O15457 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.96■□□□□ 0.31
MSH4O15457 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC16.96■□□□□ 0.31
MSH4O15457 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 RN7SL713P-201ENST00000582127 302 ntBASIC16.96■□□□□ 0.31
MSH4O15457 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.96■□□□□ 0.31
MSH4O15457 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC16.96■□□□□ 0.31
MSH4O15457 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 AC020910.5-201ENST00000623668 1865 ntBASIC16.96■□□□□ 0.31
MSH4O15457 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.96■□□□□ 0.31
MSH4O15457 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
MSH4O15457 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
MSH4O15457 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
MSH4O15457 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSH4O15457 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
MSH4O15457 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
MSH4O15457 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
MSH4O15457 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
MSH4O15457 AL138725.1-201ENST00000407347 1314 ntBASIC16.96■□□□□ 0.3
MSH4O15457 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
MSH4O15457 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.95■□□□□ 0.3
MSH4O15457 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.95■□□□□ 0.3
MSH4O15457 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms