Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC3O15379 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC3O15379 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC3O15379 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC3O15379 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC3O15379 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC3O15379 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC3O15379 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC3O15379 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.83□□□□□ -0.03
HDAC3O15379 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC3O15379 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC3O15379 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
HDAC3O15379 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 AL080243.2-201ENST00000418783 582 ntBASIC14.83□□□□□ -0.04
HDAC3O15379 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 CEND1P1-201ENST00000451006 455 ntBASIC14.83□□□□□ -0.04
HDAC3O15379 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC14.83□□□□□ -0.04
HDAC3O15379 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
HDAC3O15379 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.83□□□□□ -0.04
HDAC3O15379 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.83□□□□□ -0.04
HDAC3O15379 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.83□□□□□ -0.04
HDAC3O15379 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.83□□□□□ -0.04
HDAC3O15379 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.83□□□□□ -0.04
HDAC3O15379 AL589739.1-201ENST00000607720 493 ntBASIC14.83□□□□□ -0.04
HDAC3O15379 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.83□□□□□ -0.04
HDAC3O15379 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
HDAC3O15379 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
HDAC3O15379 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
HDAC3O15379 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.83□□□□□ -0.04
HDAC3O15379 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.83□□□□□ -0.04
HDAC3O15379 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.04
HDAC3O15379 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.83□□□□□ -0.04
HDAC3O15379 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.83□□□□□ -0.04
HDAC3O15379 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.83□□□□□ -0.04
HDAC3O15379 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
HDAC3O15379 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC3O15379 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
HDAC3O15379 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HDAC3O15379 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
HDAC3O15379 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.82□□□□□ -0.04
HDAC3O15379 MST1P2-201ENST00000457982 2291 ntBASIC14.82□□□□□ -0.04
HDAC3O15379 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC3O15379 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.82□□□□□ -0.04
HDAC3O15379 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC3O15379 AL354702.1-201ENST00000442006 1960 ntBASIC14.82□□□□□ -0.04
HDAC3O15379 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.82□□□□□ -0.04
HDAC3O15379 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC3O15379 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.82□□□□□ -0.04
HDAC3O15379 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.82□□□□□ -0.04
HDAC3O15379 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
HDAC3O15379 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.82□□□□□ -0.04
HDAC3O15379 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.82□□□□□ -0.04
HDAC3O15379 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.82□□□□□ -0.04
HDAC3O15379 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.82□□□□□ -0.04
HDAC3O15379 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HDAC3O15379 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.82□□□□□ -0.04
HDAC3O15379 LINC01115-203ENST00000606068 577 ntBASIC14.82□□□□□ -0.04
HDAC3O15379 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.82□□□□□ -0.04
HDAC3O15379 CETN4P-206ENST00000642099 2168 ntBASIC14.82□□□□□ -0.04
HDAC3O15379 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HDAC3O15379 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HDAC3O15379 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HDAC3O15379 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 181.6 ms