Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 MIR346-201ENST00000362234 95 ntBASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 AC040169.1-201ENST00000565382 521 ntBASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 INO80E-210ENST00000567705 880 ntTSL 3 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 C1R-201ENST00000535233 2211 ntTSL 2 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 AL023775.1-201ENST00000454907 1746 ntBASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 INTS4P1-203ENST00000641008 3683 ntBASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 LINC01230-201ENST00000625222 3017 ntBASIC13.21□□□□□ -0.3
CHMP1AQ9HD42 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 BEND3P1-201ENST00000421591 1944 ntBASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 ACTG1P14-201ENST00000446382 1122 ntBASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 HNRNPUP1-201ENST00000554987 333 ntBASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 RARRES2P9-201ENST00000565168 469 ntBASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 AC073957.3-201ENST00000609998 6758 ntBASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms