Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.53□□□□□ -0.24
MMP28Q9H239 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC13.53□□□□□ -0.24
MMP28Q9H239 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC13.53□□□□□ -0.24
MMP28Q9H239 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
MMP28Q9H239 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC13.53□□□□□ -0.24
MMP28Q9H239 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.53□□□□□ -0.24
MMP28Q9H239 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.53□□□□□ -0.24
MMP28Q9H239 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC13.53□□□□□ -0.24
MMP28Q9H239 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.53□□□□□ -0.24
MMP28Q9H239 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.53□□□□□ -0.24
MMP28Q9H239 CD7-202ENST00000578509 925 ntTSL 3 BASIC13.53□□□□□ -0.24
MMP28Q9H239 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC13.53□□□□□ -0.24
MMP28Q9H239 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC13.53□□□□□ -0.24
MMP28Q9H239 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.53□□□□□ -0.24
MMP28Q9H239 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
MMP28Q9H239 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
MMP28Q9H239 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.53□□□□□ -0.24
MMP28Q9H239 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
MMP28Q9H239 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
MMP28Q9H239 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC13.53□□□□□ -0.24
MMP28Q9H239 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC13.53□□□□□ -0.24
MMP28Q9H239 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
MMP28Q9H239 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC13.53□□□□□ -0.24
MMP28Q9H239 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC13.53□□□□□ -0.24
MMP28Q9H239 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC13.53□□□□□ -0.24
MMP28Q9H239 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
MMP28Q9H239 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
MMP28Q9H239 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
MMP28Q9H239 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
MMP28Q9H239 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
MMP28Q9H239 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MMP28Q9H239 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC13.52□□□□□ -0.24
MMP28Q9H239 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MMP28Q9H239 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
MMP28Q9H239 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MMP28Q9H239 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
MMP28Q9H239 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MMP28Q9H239 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
MMP28Q9H239 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
MMP28Q9H239 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
MMP28Q9H239 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MMP28Q9H239 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MMP28Q9H239 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.52□□□□□ -0.24
MMP28Q9H239 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.24
MMP28Q9H239 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
MMP28Q9H239 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
MMP28Q9H239 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.25
MMP28Q9H239 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
MMP28Q9H239 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
MMP28Q9H239 AC002056.1-201ENST00000395613 760 ntBASIC13.52□□□□□ -0.25
MMP28Q9H239 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC13.52□□□□□ -0.25
MMP28Q9H239 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC13.52□□□□□ -0.25
MMP28Q9H239 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC13.52□□□□□ -0.25
MMP28Q9H239 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
MMP28Q9H239 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC13.52□□□□□ -0.25
MMP28Q9H239 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
MMP28Q9H239 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC13.52□□□□□ -0.25
MMP28Q9H239 AC092865.6-201ENST00000642101 219 ntBASIC13.52□□□□□ -0.25
MMP28Q9H239 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC13.52□□□□□ -0.25
MMP28Q9H239 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
MMP28Q9H239 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
MMP28Q9H239 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC13.52□□□□□ -0.25
MMP28Q9H239 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13.52□□□□□ -0.25
MMP28Q9H239 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
MMP28Q9H239 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
MMP28Q9H239 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC13.52□□□□□ -0.25
MMP28Q9H239 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms