Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 GOLGA2P4-201ENST00000441462 777 ntBASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 SAMD11P1-201ENST00000571429 661 ntBASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 AL109954.1-202ENST00000564051 2148 ntBASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 CICP13-201ENST00000422015 2789 ntBASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 AL136379.1-201ENST00000623471 2642 ntBASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 CD74-212ENST00000524315 584 ntTSL 5 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAIPQ9BWF2 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.64■□□□□ 0.26
TRAIPQ9BWF2 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
TRAIPQ9BWF2 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
TRAIPQ9BWF2 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 RIT1-205ENST00000539040 919 ntTSL 2 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 C2orf69P2-201ENST00000562032 1123 ntBASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC16.64■□□□□ 0.25
TRAIPQ9BWF2 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms