Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.38■□□□□ 0.37
USP28Q96RU2 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.38■□□□□ 0.37
USP28Q96RU2 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.38■□□□□ 0.37
USP28Q96RU2 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
USP28Q96RU2 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.38■□□□□ 0.37
USP28Q96RU2 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.38■□□□□ 0.37
USP28Q96RU2 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC17.38■□□□□ 0.37
USP28Q96RU2 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
USP28Q96RU2 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.37■□□□□ 0.37
USP28Q96RU2 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC17.37■□□□□ 0.37
USP28Q96RU2 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC17.37■□□□□ 0.37
USP28Q96RU2 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC17.37■□□□□ 0.37
USP28Q96RU2 GNAQP1-201ENST00000444815 1067 ntBASIC17.37■□□□□ 0.37
USP28Q96RU2 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.37■□□□□ 0.37
USP28Q96RU2 TPRX2P-201ENST00000535362 881 ntBASIC17.37■□□□□ 0.37
USP28Q96RU2 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.37■□□□□ 0.37
USP28Q96RU2 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.37■□□□□ 0.37
USP28Q96RU2 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.37■□□□□ 0.37
USP28Q96RU2 AC005498.2-205ENST00000593218 784 ntBASIC17.37■□□□□ 0.37
USP28Q96RU2 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.37■□□□□ 0.37
USP28Q96RU2 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 GRK6P1-201ENST00000400595 1711 ntBASIC17.37■□□□□ 0.37
USP28Q96RU2 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.37■□□□□ 0.37
USP28Q96RU2 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC17.37■□□□□ 0.37
USP28Q96RU2 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
USP28Q96RU2 PCDHA3-202ENST00000532566 4594 ntBASIC17.37■□□□□ 0.37
USP28Q96RU2 AC018665.1-201ENST00000622927 1362 ntBASIC17.37■□□□□ 0.37
USP28Q96RU2 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
USP28Q96RU2 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
USP28Q96RU2 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP28Q96RU2 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.36■□□□□ 0.37
USP28Q96RU2 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 SPDYE19P-201ENST00000338590 713 ntBASIC17.36■□□□□ 0.37
USP28Q96RU2 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.36■□□□□ 0.37
USP28Q96RU2 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 MPV17-208ENST00000405076 603 ntTSL 5 BASIC17.36■□□□□ 0.37
USP28Q96RU2 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.36■□□□□ 0.37
USP28Q96RU2 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.36■□□□□ 0.37
USP28Q96RU2 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.36■□□□□ 0.37
USP28Q96RU2 MIR8072-201ENST00000614241 80 ntBASIC17.36■□□□□ 0.37
USP28Q96RU2 HSPA7-201ENST00000445535 1927 ntBASIC17.36■□□□□ 0.37
USP28Q96RU2 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
USP28Q96RU2 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
USP28Q96RU2 AC015802.1-201ENST00000588104 1449 ntBASIC17.36■□□□□ 0.37
USP28Q96RU2 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
USP28Q96RU2 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC17.36■□□□□ 0.37
USP28Q96RU2 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
USP28Q96RU2 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
USP28Q96RU2 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
USP28Q96RU2 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC17.36■□□□□ 0.37
USP28Q96RU2 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP28Q96RU2 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
USP28Q96RU2 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 AL354702.1-201ENST00000442006 1960 ntBASIC17.35■□□□□ 0.37
USP28Q96RU2 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.35■□□□□ 0.37
USP28Q96RU2 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms