Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 DUX4L45-201ENST00000566406 1057 ntBASIC21.1■□□□□ 0.97
USP47Q96K76 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 AC018442.1-201ENST00000421439 2061 ntBASIC21.1■□□□□ 0.97
USP47Q96K76 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
USP47Q96K76 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC21.1■□□□□ 0.97
USP47Q96K76 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
USP47Q96K76 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
USP47Q96K76 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC21.1■□□□□ 0.97
USP47Q96K76 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC21.1■□□□□ 0.97
USP47Q96K76 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC21.1■□□□□ 0.97
USP47Q96K76 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 AC004945.1-201ENST00000416738 983 ntBASIC21.1■□□□□ 0.97
USP47Q96K76 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC21.1■□□□□ 0.97
USP47Q96K76 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC21.1■□□□□ 0.97
USP47Q96K76 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC21.1■□□□□ 0.97
USP47Q96K76 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC21.1■□□□□ 0.97
USP47Q96K76 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP47Q96K76 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 AC018529.2-202ENST00000611482 3087 ntBASIC21.09■□□□□ 0.97
USP47Q96K76 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP47Q96K76 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP47Q96K76 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP47Q96K76 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP47Q96K76 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP47Q96K76 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP47Q96K76 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP47Q96K76 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP47Q96K76 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP47Q96K76 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP47Q96K76 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC21.09■□□□□ 0.97
USP47Q96K76 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC21.09■□□□□ 0.97
USP47Q96K76 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 SNX12-206ENST00000622259 661 ntTSL 5 BASIC21.09■□□□□ 0.97
USP47Q96K76 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC21.09■□□□□ 0.97
USP47Q96K76 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP47Q96K76 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC21.09■□□□□ 0.97
USP47Q96K76 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP47Q96K76 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC21.08■□□□□ 0.97
USP47Q96K76 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP47Q96K76 CICP14-201ENST00000629111 2732 ntBASIC21.08■□□□□ 0.97
USP47Q96K76 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC21.08■□□□□ 0.97
USP47Q96K76 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
USP47Q96K76 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP47Q96K76 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP47Q96K76 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC21.08■□□□□ 0.97
USP47Q96K76 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC21.08■□□□□ 0.96
USP47Q96K76 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC21.08■□□□□ 0.96
USP47Q96K76 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC21.08■□□□□ 0.96
USP47Q96K76 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC21.08■□□□□ 0.96
USP47Q96K76 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
USP47Q96K76 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC21.08■□□□□ 0.96
USP47Q96K76 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC21.08■□□□□ 0.96
USP47Q96K76 RER1-203ENST00000378513 3000 ntTSL 3 BASIC21.08■□□□□ 0.96
USP47Q96K76 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP47Q96K76 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP47Q96K76 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP47Q96K76 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC21.08■□□□□ 0.96
USP47Q96K76 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
USP47Q96K76 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC21.08■□□□□ 0.96
USP47Q96K76 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
USP47Q96K76 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
USP47Q96K76 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC21.08■□□□□ 0.96
USP47Q96K76 FAM8A2P-201ENST00000528813 1142 ntBASIC21.08■□□□□ 0.96
USP47Q96K76 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
USP47Q96K76 MIR4683-201ENST00000579659 81 ntBASIC21.08■□□□□ 0.96
USP47Q96K76 PPY2P-201ENST00000582808 702 ntBASIC21.08■□□□□ 0.96
USP47Q96K76 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
USP47Q96K76 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
USP47Q96K76 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC21.08■□□□□ 0.96
USP47Q96K76 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP47Q96K76 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP47Q96K76 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms