Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 AC106820.3-201ENST00000561653 397 ntBASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 CLUHP6-201ENST00000580789 941 ntBASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 AL512343.1-201ENST00000605837 169 ntBASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 AC015936.2-201ENST00000593177 259 ntBASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 MTHFR-210ENST00000641407 2387 ntBASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 ELK2AP-201ENST00000392510 1007 ntBASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 AP001063.1-201ENST00000568332 529 ntBASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 AC145423.3-201ENST00000615987 467 ntBASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 AL139099.5-201ENST00000635274 300 ntBASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 TSPY26P-202ENST00000565928 3884 ntBASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 AC134312.5-201ENST00000568031 1313 ntBASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms