Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 VAX1-201ENST00000277905 4494 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 SPDYE7P-202ENST00000420373 878 ntBASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 AC067750.1-201ENST00000608826 6545 ntBASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PPP4R4Q6NUP7 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 AL359881.3-201ENST00000602640 1721 ntBASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 REXO1L2P-201ENST00000425429 2069 ntBASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 HLA-H-201ENST00000383620 1096 ntBASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 HLA-J-203ENST00000494367 1087 ntBASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 MTHFR-210ENST00000641407 2387 ntBASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PPP4R4Q6NUP7 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms