Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.86■□□□□ 0.45
MRE11P49959 AL596325.1-201ENST00000563991 1082 ntBASIC17.86■□□□□ 0.45
MRE11P49959 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MRE11P49959 MIR4751-201ENST00000578027 74 ntBASIC17.86■□□□□ 0.45
MRE11P49959 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.86■□□□□ 0.45
MRE11P49959 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
MRE11P49959 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MRE11P49959 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.86■□□□□ 0.45
MRE11P49959 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
MRE11P49959 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MRE11P49959 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MRE11P49959 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.86■□□□□ 0.45
MRE11P49959 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MRE11P49959 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC17.86■□□□□ 0.45
MRE11P49959 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.86■□□□□ 0.45
MRE11P49959 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MRE11P49959 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.86■□□□□ 0.45
MRE11P49959 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC17.86■□□□□ 0.45
MRE11P49959 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
MRE11P49959 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
MRE11P49959 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
MRE11P49959 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC17.85■□□□□ 0.45
MRE11P49959 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
MRE11P49959 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC17.85■□□□□ 0.45
MRE11P49959 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.85■□□□□ 0.45
MRE11P49959 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC17.85■□□□□ 0.45
MRE11P49959 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.85■□□□□ 0.45
MRE11P49959 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
MRE11P49959 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.85■□□□□ 0.45
MRE11P49959 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.85■□□□□ 0.45
MRE11P49959 HLA-DPB2-205ENST00000435074 1188 ntBASIC17.85■□□□□ 0.45
MRE11P49959 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC17.85■□□□□ 0.45
MRE11P49959 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.85■□□□□ 0.45
MRE11P49959 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
MRE11P49959 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.85■□□□□ 0.45
MRE11P49959 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.85■□□□□ 0.45
MRE11P49959 AC021097.1-201ENST00000607902 574 ntBASIC17.85■□□□□ 0.45
MRE11P49959 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.85■□□□□ 0.45
MRE11P49959 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
MRE11P49959 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
MRE11P49959 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
MRE11P49959 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MRE11P49959 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
MRE11P49959 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
MRE11P49959 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.84■□□□□ 0.45
MRE11P49959 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.84■□□□□ 0.45
MRE11P49959 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
MRE11P49959 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.84■□□□□ 0.45
MRE11P49959 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
MRE11P49959 VN2R19P-201ENST00000442399 1052 ntBASIC17.84■□□□□ 0.45
MRE11P49959 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.84■□□□□ 0.45
MRE11P49959 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.84■□□□□ 0.45
MRE11P49959 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.84■□□□□ 0.45
MRE11P49959 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.84■□□□□ 0.45
MRE11P49959 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.84■□□□□ 0.45
MRE11P49959 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 AL589182.2-201ENST00000619332 1049 ntBASIC17.84■□□□□ 0.45
MRE11P49959 AC025048.6-201ENST00000634326 1161 ntBASIC17.84■□□□□ 0.45
MRE11P49959 AC105339.1-204ENST00000636249 355 ntBASIC17.84■□□□□ 0.45
MRE11P49959 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC17.84■□□□□ 0.45
MRE11P49959 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC17.84■□□□□ 0.45
MRE11P49959 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
MRE11P49959 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC17.84■□□□□ 0.45
MRE11P49959 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.84■□□□□ 0.45
MRE11P49959 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MRE11P49959 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms