Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.58□□□□□ -0.07
MSX2P35548 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.58□□□□□ -0.07
MSX2P35548 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
MSX2P35548 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
MSX2P35548 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
MSX2P35548 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
MSX2P35548 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
MSX2P35548 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
MSX2P35548 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.58□□□□□ -0.08
MSX2P35548 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 Z82170.1-201ENST00000625081 3192 ntBASIC14.58□□□□□ -0.08
MSX2P35548 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 AC019294.4-201ENST00000561777 2905 ntBASIC14.58□□□□□ -0.08
MSX2P35548 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.58□□□□□ -0.08
MSX2P35548 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
MSX2P35548 HLA-H-201ENST00000383620 1096 ntBASIC14.58□□□□□ -0.08
MSX2P35548 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.58□□□□□ -0.08
MSX2P35548 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC14.58□□□□□ -0.08
MSX2P35548 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC14.58□□□□□ -0.08
MSX2P35548 RNA5SP419-201ENST00000515908 135 ntBASIC14.58□□□□□ -0.08
MSX2P35548 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.58□□□□□ -0.08
MSX2P35548 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.58□□□□□ -0.08
MSX2P35548 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.58□□□□□ -0.08
MSX2P35548 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.58□□□□□ -0.08
MSX2P35548 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 PDPK2P-202ENST00000562415 1191 ntBASIC14.58□□□□□ -0.08
MSX2P35548 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC14.58□□□□□ -0.08
MSX2P35548 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.58□□□□□ -0.08
MSX2P35548 AP000842.3-202ENST00000569238 1080 ntBASIC14.58□□□□□ -0.08
MSX2P35548 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 AL121894.2-201ENST00000602977 491 ntBASIC14.58□□□□□ -0.08
MSX2P35548 AC026979.3-201ENST00000607315 403 ntBASIC14.58□□□□□ -0.08
MSX2P35548 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.58□□□□□ -0.08
MSX2P35548 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.58□□□□□ -0.08
MSX2P35548 AC092865.6-201ENST00000642101 219 ntBASIC14.58□□□□□ -0.08
MSX2P35548 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 AKAP8P1-201ENST00000434743 1349 ntBASIC14.58□□□□□ -0.08
MSX2P35548 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
MSX2P35548 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
MSX2P35548 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MSX2P35548 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.57□□□□□ -0.08
MSX2P35548 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.57□□□□□ -0.08
MSX2P35548 AP3S2-216ENST00000617003 1561 ntBASIC14.57□□□□□ -0.08
MSX2P35548 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
MSX2P35548 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.57□□□□□ -0.08
MSX2P35548 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 MIR346-201ENST00000362234 95 ntBASIC14.57□□□□□ -0.08
MSX2P35548 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.57□□□□□ -0.08
MSX2P35548 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
MSX2P35548 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC14.57□□□□□ -0.08
MSX2P35548 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 CD63-204ENST00000546939 779 ntTSL 3 BASIC14.57□□□□□ -0.08
MSX2P35548 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC14.57□□□□□ -0.08
MSX2P35548 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.57□□□□□ -0.08
MSX2P35548 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.57□□□□□ -0.08
MSX2P35548 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
MSX2P35548 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
MSX2P35548 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms