Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
CIITAP33076 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC17.05■□□□□ 0.32
CIITAP33076 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.05■□□□□ 0.32
CIITAP33076 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
CIITAP33076 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.05■□□□□ 0.32
CIITAP33076 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.05■□□□□ 0.32
CIITAP33076 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.05■□□□□ 0.32
CIITAP33076 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CIITAP33076 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CIITAP33076 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.04■□□□□ 0.32
CIITAP33076 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CIITAP33076 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.04■□□□□ 0.32
CIITAP33076 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
CIITAP33076 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CIITAP33076 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
CIITAP33076 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
CIITAP33076 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.04■□□□□ 0.32
CIITAP33076 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 TLE1P1-201ENST00000422965 589 ntBASIC17.04■□□□□ 0.32
CIITAP33076 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC17.04■□□□□ 0.32
CIITAP33076 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.04■□□□□ 0.32
CIITAP33076 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.04■□□□□ 0.32
CIITAP33076 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC17.04■□□□□ 0.32
CIITAP33076 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CIITAP33076 AL583810.1-201ENST00000553344 1045 ntBASIC17.04■□□□□ 0.32
CIITAP33076 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC17.04■□□□□ 0.32
CIITAP33076 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.04■□□□□ 0.32
CIITAP33076 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.04■□□□□ 0.32
CIITAP33076 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC17.04■□□□□ 0.32
CIITAP33076 AC003102.2-201ENST00000589195 1469 ntBASIC17.04■□□□□ 0.32
CIITAP33076 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.04■□□□□ 0.32
CIITAP33076 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CIITAP33076 AC006058.4-201ENST00000624016 1670 ntBASIC17.04■□□□□ 0.32
CIITAP33076 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.04■□□□□ 0.32
CIITAP33076 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.04■□□□□ 0.32
CIITAP33076 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.04■□□□□ 0.32
CIITAP33076 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.04■□□□□ 0.32
CIITAP33076 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CIITAP33076 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.03■□□□□ 0.32
CIITAP33076 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CIITAP33076 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 FKBP4P6-201ENST00000457486 1332 ntBASIC17.03■□□□□ 0.32
CIITAP33076 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 AL354989.2-201ENST00000435838 1540 ntBASIC17.03■□□□□ 0.32
CIITAP33076 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.03■□□□□ 0.32
CIITAP33076 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CIITAP33076 AC244107.1-201ENST00000442033 332 ntBASIC17.03■□□□□ 0.32
CIITAP33076 CNN2P10-201ENST00000443067 918 ntBASIC17.03■□□□□ 0.32
CIITAP33076 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC17.03■□□□□ 0.32
CIITAP33076 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.03■□□□□ 0.32
CIITAP33076 RN7SL713P-201ENST00000582127 302 ntBASIC17.03■□□□□ 0.32
CIITAP33076 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.03■□□□□ 0.32
CIITAP33076 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC17.03■□□□□ 0.32
CIITAP33076 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.03■□□□□ 0.32
CIITAP33076 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms