Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
SMARCA1P28370 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.34■□□□□ 0.37
SMARCA1P28370 AC131206.1-201ENST00000538078 1211 ntBASIC17.34■□□□□ 0.37
SMARCA1P28370 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.34■□□□□ 0.37
SMARCA1P28370 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.34■□□□□ 0.37
SMARCA1P28370 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.34■□□□□ 0.37
SMARCA1P28370 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
SMARCA1P28370 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.34■□□□□ 0.37
SMARCA1P28370 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.34■□□□□ 0.37
SMARCA1P28370 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SMARCA1P28370 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SMARCA1P28370 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
SMARCA1P28370 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SMARCA1P28370 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
SMARCA1P28370 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SMARCA1P28370 SALL4P5-201ENST00000419001 1760 ntBASIC17.33■□□□□ 0.37
SMARCA1P28370 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17.33■□□□□ 0.37
SMARCA1P28370 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SMARCA1P28370 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SMARCA1P28370 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC17.33■□□□□ 0.37
SMARCA1P28370 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SMARCA1P28370 AC011840.2-201ENST00000563063 1520 ntBASIC17.33■□□□□ 0.37
SMARCA1P28370 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SMARCA1P28370 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
SMARCA1P28370 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.33■□□□□ 0.36
SMARCA1P28370 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC17.33■□□□□ 0.36
SMARCA1P28370 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC17.33■□□□□ 0.36
SMARCA1P28370 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC17.33■□□□□ 0.36
SMARCA1P28370 HOMER2P2-201ENST00000451621 847 ntBASIC17.33■□□□□ 0.36
SMARCA1P28370 BNIP3P42-201ENST00000454982 569 ntBASIC17.33■□□□□ 0.36
SMARCA1P28370 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.33■□□□□ 0.36
SMARCA1P28370 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.33■□□□□ 0.36
SMARCA1P28370 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.33■□□□□ 0.36
SMARCA1P28370 BNIP3P29-201ENST00000598302 571 ntBASIC17.33■□□□□ 0.36
SMARCA1P28370 AC011447.5-201ENST00000616168 564 ntBASIC17.33■□□□□ 0.36
SMARCA1P28370 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SMARCA1P28370 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 AC018442.1-201ENST00000421439 2061 ntBASIC17.33■□□□□ 0.36
SMARCA1P28370 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.33■□□□□ 0.36
SMARCA1P28370 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMARCA1P28370 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.32■□□□□ 0.36
SMARCA1P28370 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 TUBB1P2-201ENST00000422712 1306 ntBASIC17.32■□□□□ 0.36
SMARCA1P28370 TUBB1P1-201ENST00000503144 1300 ntBASIC17.32■□□□□ 0.36
SMARCA1P28370 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 AL355994.2-201ENST00000447882 704 ntBASIC17.32■□□□□ 0.36
SMARCA1P28370 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.32■□□□□ 0.36
SMARCA1P28370 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.32■□□□□ 0.36
SMARCA1P28370 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.32■□□□□ 0.36
SMARCA1P28370 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
SMARCA1P28370 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.32■□□□□ 0.36
SMARCA1P28370 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 INE2-201ENST00000630399 1874 ntBASIC17.32■□□□□ 0.36
SMARCA1P28370 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.32■□□□□ 0.36
SMARCA1P28370 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
SMARCA1P28370 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.32■□□□□ 0.36
SMARCA1P28370 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC17.32■□□□□ 0.36
SMARCA1P28370 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.32■□□□□ 0.36
SMARCA1P28370 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.32■□□□□ 0.36
SMARCA1P28370 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMARCA1P28370 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.31■□□□□ 0.36
SMARCA1P28370 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.31■□□□□ 0.36
SMARCA1P28370 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SMARCA1P28370 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17.31■□□□□ 0.36
SMARCA1P28370 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms