Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 REXO1L4P-201ENST00000605109 1937 ntBASIC11.67□□□□□ -0.54
HLA-DMBP28068 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 SERBP1P3-201ENST00000459980 809 ntBASIC11.67□□□□□ -0.54
HLA-DMBP28068 PFN2-205ENST00000461868 613 ntTSL 2 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 AQP6-203ENST00000551733 849 ntTSL 3 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 AL109936.8-201ENST00000641772 604 ntBASIC11.67□□□□□ -0.54
HLA-DMBP28068 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC11.67□□□□□ -0.54
HLA-DMBP28068 SLC9A7P1-202ENST00000556476 2239 ntBASIC11.67□□□□□ -0.54
HLA-DMBP28068 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 AC097359.2-201ENST00000604992 2389 ntBASIC11.67□□□□□ -0.54
HLA-DMBP28068 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 AC015922.1-201ENST00000421102 1152 ntBASIC11.66□□□□□ -0.54
HLA-DMBP28068 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 RPL13P2-201ENST00000440687 659 ntBASIC11.66□□□□□ -0.54
HLA-DMBP28068 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 AL158211.3-201ENST00000607385 239 ntBASIC11.66□□□□□ -0.54
HLA-DMBP28068 TEX28P1-201ENST00000613479 1221 ntBASIC11.66□□□□□ -0.54
HLA-DMBP28068 AL138828.2-201ENST00000615812 383 ntBASIC11.66□□□□□ -0.54
HLA-DMBP28068 TEX28P2-201ENST00000617764 1221 ntBASIC11.66□□□□□ -0.54
HLA-DMBP28068 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DMBP28068 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
HLA-DMBP28068 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 AL121723.1-201ENST00000445194 1519 ntBASIC11.65□□□□□ -0.54
HLA-DMBP28068 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms