Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.59■□□□□ 0.09
HMGA1P17096 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HMGA1P17096 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.59■□□□□ 0.09
HMGA1P17096 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.59■□□□□ 0.09
HMGA1P17096 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC15.59■□□□□ 0.09
HMGA1P17096 DEF8-202ENST00000418391 852 ntTSL 2 BASIC15.59■□□□□ 0.09
HMGA1P17096 KRTAP19-9P-201ENST00000421795 191 ntBASIC15.59■□□□□ 0.09
HMGA1P17096 KLF2P1-201ENST00000447438 1042 ntBASIC15.59■□□□□ 0.09
HMGA1P17096 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.59■□□□□ 0.09
HMGA1P17096 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.59■□□□□ 0.09
HMGA1P17096 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.59■□□□□ 0.09
HMGA1P17096 SDHD-202ENST00000525291 790 ntTSL 3 BASIC15.59■□□□□ 0.09
HMGA1P17096 AC131206.1-201ENST00000538078 1211 ntBASIC15.59■□□□□ 0.09
HMGA1P17096 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC15.59■□□□□ 0.09
HMGA1P17096 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC15.59■□□□□ 0.09
HMGA1P17096 AC132192.2-201ENST00000596206 1147 ntBASIC15.59■□□□□ 0.09
HMGA1P17096 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC15.59■□□□□ 0.09
HMGA1P17096 AL645939.5-201ENST00000606834 243 ntBASIC15.59■□□□□ 0.09
HMGA1P17096 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.59■□□□□ 0.09
HMGA1P17096 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
HMGA1P17096 AC068587.8-201ENST00000641239 219 ntBASIC15.59■□□□□ 0.09
HMGA1P17096 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 AL109954.1-202ENST00000564051 2148 ntBASIC15.59■□□□□ 0.09
HMGA1P17096 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.59■□□□□ 0.09
HMGA1P17096 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HMGA1P17096 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
HMGA1P17096 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HMGA1P17096 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
HMGA1P17096 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
HMGA1P17096 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
HMGA1P17096 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
HMGA1P17096 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
HMGA1P17096 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
HMGA1P17096 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
HMGA1P17096 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.09
HMGA1P17096 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
HMGA1P17096 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
HMGA1P17096 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGA1P17096 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGA1P17096 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HMGA1P17096 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
HMGA1P17096 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HMGA1P17096 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGA1P17096 CYP46A4P-201ENST00000414953 267 ntBASIC15.58■□□□□ 0.08
HMGA1P17096 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGA1P17096 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGA1P17096 TSACC-208ENST00000481479 741 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGA1P17096 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGA1P17096 GCOM2-201ENST00000509133 1104 ntBASIC15.58■□□□□ 0.08
HMGA1P17096 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.58■□□□□ 0.08
HMGA1P17096 CSH2-206ENST00000560142 749 ntTSL 5 BASIC15.58■□□□□ 0.08
HMGA1P17096 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.58■□□□□ 0.08
HMGA1P17096 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC15.58■□□□□ 0.08
HMGA1P17096 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGA1P17096 MIR3619-201ENST00000579667 83 ntBASIC15.58■□□□□ 0.08
HMGA1P17096 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGA1P17096 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGA1P17096 RN7SL163P-201ENST00000583100 276 ntBASIC15.58■□□□□ 0.08
HMGA1P17096 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.58■□□□□ 0.08
HMGA1P17096 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
HMGA1P17096 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC15.58■□□□□ 0.08
HMGA1P17096 AC068587.10-201ENST00000641210 219 ntBASIC15.58■□□□□ 0.08
HMGA1P17096 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.58■□□□□ 0.08
HMGA1P17096 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
HMGA1P17096 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGA1P17096 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
HMGA1P17096 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
HMGA1P17096 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
HMGA1P17096 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HMGA1P17096 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.58■□□□□ 0.08
HMGA1P17096 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGA1P17096 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HMGA1P17096 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGA1P17096 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
HMGA1P17096 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGA1P17096 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGA1P17096 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGA1P17096 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGA1P17096 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.57■□□□□ 0.08
HMGA1P17096 AC244394.1-201ENST00000435000 1665 ntBASIC15.57■□□□□ 0.08
HMGA1P17096 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.57■□□□□ 0.08
HMGA1P17096 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.57■□□□□ 0.08
HMGA1P17096 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
HMGA1P17096 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGA1P17096 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGA1P17096 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
HMGA1P17096 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HMGA1P17096 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms