Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
CXCL1P09341 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC11.85□□□□□ -0.51
CXCL1P09341 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC11.85□□□□□ -0.51
CXCL1P09341 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 AP002761.4-201ENST00000565433 3361 ntBASIC11.85□□□□□ -0.51
CXCL1P09341 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 CROT-203ENST00000419147 2959 ntTSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC11.84□□□□□ -0.51
CXCL1P09341 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC11.84□□□□□ -0.51
CXCL1P09341 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC11.84□□□□□ -0.51
CXCL1P09341 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC11.84□□□□□ -0.51
CXCL1P09341 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
CXCL1P09341 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC11.84□□□□□ -0.51
CXCL1P09341 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC11.84□□□□□ -0.51
CXCL1P09341 HIST2H3DP1-201ENST00000401004 416 ntBASIC11.84□□□□□ -0.51
CXCL1P09341 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC11.84□□□□□ -0.51
CXCL1P09341 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC11.84□□□□□ -0.51
CXCL1P09341 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 TPT1P11-201ENST00000458482 498 ntBASIC11.84□□□□□ -0.51
CXCL1P09341 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC11.84□□□□□ -0.51
CXCL1P09341 CFL1-202ENST00000524553 860 ntTSL 2 BASIC11.84□□□□□ -0.51
CXCL1P09341 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC11.84□□□□□ -0.51
CXCL1P09341 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC11.84□□□□□ -0.51
CXCL1P09341 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC11.84□□□□□ -0.51
CXCL1P09341 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC11.84□□□□□ -0.51
CXCL1P09341 ACTL9-202ENST00000612068 1252 ntBASIC11.84□□□□□ -0.51
CXCL1P09341 REXO1L6P-202ENST00000619970 1078 ntBASIC11.84□□□□□ -0.51
CXCL1P09341 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC11.84□□□□□ -0.51
CXCL1P09341 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC11.84□□□□□ -0.51
CXCL1P09341 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC11.84□□□□□ -0.51
CXCL1P09341 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC11.84□□□□□ -0.51
CXCL1P09341 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
CXCL1P09341 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC11.84□□□□□ -0.51
CXCL1P09341 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC11.84□□□□□ -0.51
CXCL1P09341 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC11.84□□□□□ -0.51
CXCL1P09341 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
CXCL1P09341 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
CXCL1P09341 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CXCL1P09341 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC11.83□□□□□ -0.51
CXCL1P09341 SF1-209ENST00000433274 2317 ntTSL 2 BASIC11.83□□□□□ -0.51
CXCL1P09341 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC11.83□□□□□ -0.52
CXCL1P09341 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 TRIM80P-201ENST00000455685 2848 ntBASIC11.83□□□□□ -0.52
CXCL1P09341 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
CXCL1P09341 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
CXCL1P09341 TET3-201ENST00000305799 5174 ntTSL 5 BASIC11.83□□□□□ -0.52
CXCL1P09341 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
CXCL1P09341 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms