Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 AC100757.3-201ENST00000622361 1406 ntBASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 AC015922.1-201ENST00000421102 1152 ntBASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 PON3-203ENST00000427422 894 ntTSL 3 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 GHSR-202ENST00000427970 912 ntBASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 IGHV3-42-201ENST00000520410 361 ntBASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 AC044860.1-202ENST00000559481 777 ntBASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 AP000845.1-201ENST00000581677 2131 ntBASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 AC011467.4-201ENST00000594891 528 ntBASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 AL844908.2-201ENST00000609461 460 ntBASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 AC074044.1-201ENST00000609673 707 ntBASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
RHBDD3Q9Y3P4 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 AL590560.3-201ENST00000623350 461 ntBASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.4□□□□□ -0.26
RHBDD3Q9Y3P4 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
RHBDD3Q9Y3P4 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
RHBDD3Q9Y3P4 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.27
RHBDD3Q9Y3P4 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RHBDD3Q9Y3P4 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RHBDD3Q9Y3P4 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
RHBDD3Q9Y3P4 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RHBDD3Q9Y3P4 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RHBDD3Q9Y3P4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms