Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 KRT8P24-201ENST00000560290 1559 ntBASIC15.02■□□□□ -0
MKS1Q9NXB0 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.02■□□□□ -0
MKS1Q9NXB0 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.02■□□□□ -0
MKS1Q9NXB0 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
MKS1Q9NXB0 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.02■□□□□ -0
MKS1Q9NXB0 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.02■□□□□ -0
MKS1Q9NXB0 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
MKS1Q9NXB0 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.02■□□□□ -0
MKS1Q9NXB0 TUBB3P1-201ENST00000405796 1332 ntBASIC15.02■□□□□ -0
MKS1Q9NXB0 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
MKS1Q9NXB0 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.02■□□□□ -0
MKS1Q9NXB0 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
MKS1Q9NXB0 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
MKS1Q9NXB0 AL645937.2-201ENST00000396808 931 ntBASIC15.02■□□□□ -0
MKS1Q9NXB0 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.02■□□□□ -0
MKS1Q9NXB0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.02■□□□□ -0
MKS1Q9NXB0 RN7SL618P-201ENST00000477850 296 ntBASIC15.02■□□□□ -0
MKS1Q9NXB0 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
MKS1Q9NXB0 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.02■□□□□ -0
MKS1Q9NXB0 SDHAP3-202ENST00000515467 728 ntBASIC15.02■□□□□ -0
MKS1Q9NXB0 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.02■□□□□ -0
MKS1Q9NXB0 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.02■□□□□ -0
MKS1Q9NXB0 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.02■□□□□ -0
MKS1Q9NXB0 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.02■□□□□ -0
MKS1Q9NXB0 TEX28P1-201ENST00000613479 1221 ntBASIC15.02■□□□□ -0
MKS1Q9NXB0 TEX28P2-201ENST00000617764 1221 ntBASIC15.02■□□□□ -0
MKS1Q9NXB0 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MKS1Q9NXB0 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 AL137783.1-201ENST00000623494 1896 ntBASIC15.01□□□□□ -0.01
MKS1Q9NXB0 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 MIR4469-201ENST00000583919 79 ntBASIC15.01□□□□□ -0.01
MKS1Q9NXB0 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 AL109936.8-201ENST00000641772 604 ntBASIC15.01□□□□□ -0.01
MKS1Q9NXB0 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 AC005252.3-201ENST00000623855 2258 ntBASIC15.01□□□□□ -0.01
MKS1Q9NXB0 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 TCAM1P-207ENST00000485295 1537 ntBASIC15.01□□□□□ -0.01
MKS1Q9NXB0 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.01□□□□□ -0.01
MKS1Q9NXB0 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC15□□□□□ -0.01
MKS1Q9NXB0 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms