Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
MMP28Q9H239 CD99-202ENST00000381180 530 ntTSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 AC140658.5-201ENST00000438532 169 ntBASIC13.55□□□□□ -0.24
MMP28Q9H239 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 AC074386.1-202ENST00000463561 864 ntBASIC13.55□□□□□ -0.24
MMP28Q9H239 AC109635.5-201ENST00000533593 962 ntBASIC13.55□□□□□ -0.24
MMP28Q9H239 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
MMP28Q9H239 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 MTDHP5-201ENST00000598980 586 ntBASIC13.55□□□□□ -0.24
MMP28Q9H239 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 AC068137.2-201ENST00000605408 478 ntBASIC13.55□□□□□ -0.24
MMP28Q9H239 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC13.55□□□□□ -0.24
MMP28Q9H239 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
MMP28Q9H239 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.55□□□□□ -0.24
MMP28Q9H239 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 AC083964.2-201ENST00000623988 2396 ntBASIC13.54□□□□□ -0.24
MMP28Q9H239 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 AC018529.2-202ENST00000611482 3087 ntBASIC13.54□□□□□ -0.24
MMP28Q9H239 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
MMP28Q9H239 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC13.54□□□□□ -0.24
MMP28Q9H239 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.54□□□□□ -0.24
MMP28Q9H239 PMS2P2-201ENST00000425039 1128 ntBASIC13.54□□□□□ -0.24
MMP28Q9H239 URGCP-206ENST00000446958 365 ntTSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.54□□□□□ -0.24
MMP28Q9H239 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC13.54□□□□□ -0.24
MMP28Q9H239 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC13.54□□□□□ -0.24
MMP28Q9H239 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 AL009183.1-201ENST00000603760 355 ntBASIC13.54□□□□□ -0.24
MMP28Q9H239 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 AL513190.1-201ENST00000621254 727 ntBASIC13.54□□□□□ -0.24
MMP28Q9H239 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 AC018892.3-201ENST00000623986 2499 ntBASIC13.54□□□□□ -0.24
MMP28Q9H239 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
MMP28Q9H239 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
MMP28Q9H239 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
MMP28Q9H239 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
MMP28Q9H239 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
MMP28Q9H239 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MMP28Q9H239 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
MMP28Q9H239 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms