Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.7□□□□□ -0.06
PPP4R4Q6NUP7 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PPP4R4Q6NUP7 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 CNN2P2-201ENST00000443536 909 ntBASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 CNN2P3-201ENST00000450201 906 ntBASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 AC026150.2-201ENST00000564693 1156 ntBASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 SPTSSB-204ENST00000617024 1292 ntBASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 AL136317.3-201ENST00000618497 906 ntBASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 PID1-202ENST00000392054 2745 ntTSL 2 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.69□□□□□ -0.06
PPP4R4Q6NUP7 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 INTS4P1-203ENST00000641008 3683 ntBASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 AC125807.1-201ENST00000483097 614 ntBASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 IGHV3-42-201ENST00000520410 361 ntBASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 LINC01225-203ENST00000563550 1244 ntBASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 AC093512.1-201ENST00000617969 520 ntBASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 AC113367.3-201ENST00000508316 1912 ntBASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 AC097359.2-201ENST00000604992 2389 ntBASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PPP4R4Q6NUP7 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms