Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.46□□□□□ -0.09
LIM2P55344 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.46□□□□□ -0.09
LIM2P55344 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.46□□□□□ -0.09
LIM2P55344 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
LIM2P55344 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.46□□□□□ -0.1
LIM2P55344 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
LIM2P55344 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LIM2P55344 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
LIM2P55344 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LIM2P55344 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LIM2P55344 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LIM2P55344 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
LIM2P55344 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
LIM2P55344 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
LIM2P55344 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 AL157414.3-201ENST00000624276 1954 ntBASIC14.45□□□□□ -0.1
LIM2P55344 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 FLJ16779-201ENST00000612722 7638 ntBASIC14.45□□□□□ -0.1
LIM2P55344 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.45□□□□□ -0.1
LIM2P55344 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.45□□□□□ -0.1
LIM2P55344 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.45□□□□□ -0.1
LIM2P55344 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
LIM2P55344 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
LIM2P55344 AC007191.1-201ENST00000623179 2995 ntBASIC14.45□□□□□ -0.1
LIM2P55344 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 RNU1-114P-201ENST00000365297 166 ntBASIC14.45□□□□□ -0.1
LIM2P55344 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.45□□□□□ -0.1
LIM2P55344 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.45□□□□□ -0.1
LIM2P55344 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
LIM2P55344 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.45□□□□□ -0.1
LIM2P55344 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.45□□□□□ -0.1
LIM2P55344 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.45□□□□□ -0.1
LIM2P55344 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.45□□□□□ -0.1
LIM2P55344 RN7SL837P-201ENST00000463010 287 ntBASIC14.45□□□□□ -0.1
LIM2P55344 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
LIM2P55344 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.45□□□□□ -0.1
LIM2P55344 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.45□□□□□ -0.1
LIM2P55344 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
LIM2P55344 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.45□□□□□ -0.1
LIM2P55344 AC010319.3-201ENST00000597028 470 ntBASIC14.45□□□□□ -0.1
LIM2P55344 AP005019.2-201ENST00000615104 511 ntBASIC14.45□□□□□ -0.1
LIM2P55344 RPSAP52-203ENST00000622976 1023 ntBASIC14.45□□□□□ -0.1
LIM2P55344 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.45□□□□□ -0.1
LIM2P55344 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.45□□□□□ -0.1
LIM2P55344 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
LIM2P55344 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.45□□□□□ -0.1
LIM2P55344 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.45□□□□□ -0.1
LIM2P55344 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.45□□□□□ -0.1
LIM2P55344 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.45□□□□□ -0.1
LIM2P55344 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
LIM2P55344 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
LIM2P55344 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
LIM2P55344 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.45□□□□□ -0.1
LIM2P55344 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LIM2P55344 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.45□□□□□ -0.1
LIM2P55344 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
LIM2P55344 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
LIM2P55344 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
LIM2P55344 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.44□□□□□ -0.1
LIM2P55344 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.44□□□□□ -0.1
LIM2P55344 CU639417.3-201ENST00000624240 1404 ntBASIC14.44□□□□□ -0.1
LIM2P55344 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
LIM2P55344 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.44□□□□□ -0.1
LIM2P55344 ACKR1-201ENST00000368121 1240 ntBASIC14.44□□□□□ -0.1
LIM2P55344 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.44□□□□□ -0.1
LIM2P55344 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
LIM2P55344 AC114812.1-204ENST00000449669 728 ntBASIC14.44□□□□□ -0.1
LIM2P55344 INE1-201ENST00000456273 945 ntBASIC14.44□□□□□ -0.1
LIM2P55344 AC093433.1-201ENST00000458048 571 ntBASIC14.44□□□□□ -0.1
LIM2P55344 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms