Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.88■□□□□ 0.13
CDH6P55285 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.88■□□□□ 0.13
CDH6P55285 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.88■□□□□ 0.13
CDH6P55285 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.88■□□□□ 0.13
CDH6P55285 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.88■□□□□ 0.13
CDH6P55285 BRI3BPP1-201ENST00000594224 787 ntBASIC15.88■□□□□ 0.13
CDH6P55285 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.88■□□□□ 0.13
CDH6P55285 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.88■□□□□ 0.13
CDH6P55285 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.88■□□□□ 0.13
CDH6P55285 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.88■□□□□ 0.13
CDH6P55285 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
CDH6P55285 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.88■□□□□ 0.13
CDH6P55285 AC093525.8-201ENST00000624099 1342 ntBASIC15.88■□□□□ 0.13
CDH6P55285 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CDH6P55285 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.88■□□□□ 0.13
CDH6P55285 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.88■□□□□ 0.13
CDH6P55285 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
CDH6P55285 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CDH6P55285 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
CDH6P55285 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CDH6P55285 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH6P55285 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.87■□□□□ 0.13
CDH6P55285 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.87■□□□□ 0.13
CDH6P55285 AL158070.2-201ENST00000623713 1621 ntBASIC15.87■□□□□ 0.13
CDH6P55285 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.87■□□□□ 0.13
CDH6P55285 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.87■□□□□ 0.13
CDH6P55285 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.87■□□□□ 0.13
CDH6P55285 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.87■□□□□ 0.13
CDH6P55285 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.87■□□□□ 0.13
CDH6P55285 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.87■□□□□ 0.13
CDH6P55285 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.87■□□□□ 0.13
CDH6P55285 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.87■□□□□ 0.13
CDH6P55285 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.87■□□□□ 0.13
CDH6P55285 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.87■□□□□ 0.13
CDH6P55285 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.87■□□□□ 0.13
CDH6P55285 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.87■□□□□ 0.13
CDH6P55285 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.87■□□□□ 0.13
CDH6P55285 AC099568.2-201ENST00000609194 695 ntBASIC15.87■□□□□ 0.13
CDH6P55285 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.87■□□□□ 0.13
CDH6P55285 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CDH6P55285 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.87■□□□□ 0.13
CDH6P55285 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CDH6P55285 AL390755.1-201ENST00000623716 2027 ntBASIC15.87■□□□□ 0.13
CDH6P55285 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDH6P55285 REXO1L5P-201ENST00000622260 2098 ntBASIC15.87■□□□□ 0.13
CDH6P55285 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CDH6P55285 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.86■□□□□ 0.13
CDH6P55285 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.86■□□□□ 0.13
CDH6P55285 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.86■□□□□ 0.13
CDH6P55285 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.86■□□□□ 0.13
CDH6P55285 INTS4P2-202ENST00000614726 2019 ntBASIC15.86■□□□□ 0.13
CDH6P55285 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.86■□□□□ 0.13
CDH6P55285 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.86■□□□□ 0.13
CDH6P55285 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 DFFBP1-201ENST00000433250 979 ntBASIC15.86■□□□□ 0.13
CDH6P55285 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CDH6P55285 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.86■□□□□ 0.13
CDH6P55285 AL132655.2-201ENST00000596276 594 ntBASIC15.86■□□□□ 0.13
CDH6P55285 LINC02560-201ENST00000596379 459 ntBASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms