Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC007389.4-201ENST00000454674 793 ntBASIC15.79■□□□□ 0.12
PTPN9P43378 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN9P43378 TDH-203ENST00000531764 1110 ntBASIC15.79■□□□□ 0.12
PTPN9P43378 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN9P43378 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
PTPN9P43378 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PTPN9P43378 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN9P43378 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PTPN9P43378 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN9P43378 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN9P43378 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.79■□□□□ 0.12
PTPN9P43378 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.78■□□□□ 0.12
PTPN9P43378 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
PTPN9P43378 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN9P43378 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 CU639417.3-201ENST00000624240 1404 ntBASIC15.78■□□□□ 0.12
PTPN9P43378 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PTPN9P43378 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PTPN9P43378 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
PTPN9P43378 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PTPN9P43378 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.78■□□□□ 0.12
PTPN9P43378 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
PTPN9P43378 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
PTPN9P43378 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PTPN9P43378 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.78■□□□□ 0.12
PTPN9P43378 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.78■□□□□ 0.12
PTPN9P43378 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.78■□□□□ 0.12
PTPN9P43378 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.78■□□□□ 0.12
PTPN9P43378 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.78■□□□□ 0.12
PTPN9P43378 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.78■□□□□ 0.12
PTPN9P43378 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.78■□□□□ 0.12
PTPN9P43378 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
PTPN9P43378 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN9P43378 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN9P43378 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.78■□□□□ 0.12
PTPN9P43378 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.78■□□□□ 0.12
PTPN9P43378 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 AC099063.4-201ENST00000641099 1602 ntBASIC15.78■□□□□ 0.12
PTPN9P43378 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.78■□□□□ 0.12
PTPN9P43378 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.78■□□□□ 0.12
PTPN9P43378 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN9P43378 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN9P43378 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 NORAD-201ENST00000565493 5339 ntBASIC15.78■□□□□ 0.12
PTPN9P43378 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
PTPN9P43378 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN9P43378 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 AP002414.2-201ENST00000591780 3365 ntBASIC15.78■□□□□ 0.12
PTPN9P43378 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.78■□□□□ 0.12
PTPN9P43378 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN9P43378 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.77■□□□□ 0.12
PTPN9P43378 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN9P43378 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.77■□□□□ 0.12
PTPN9P43378 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.77■□□□□ 0.12
PTPN9P43378 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN9P43378 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN9P43378 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN9P43378 AC018665.1-201ENST00000622927 1362 ntBASIC15.77■□□□□ 0.12
PTPN9P43378 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN9P43378 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.77■□□□□ 0.12
PTPN9P43378 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN9P43378 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.77■□□□□ 0.12
PTPN9P43378 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN9P43378 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN9P43378 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.77■□□□□ 0.12
PTPN9P43378 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN9P43378 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.77■□□□□ 0.12
PTPN9P43378 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN9P43378 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms