Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14□□□□□ -0.17
RFC3P40938 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14□□□□□ -0.17
RFC3P40938 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14□□□□□ -0.17
RFC3P40938 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14□□□□□ -0.17
RFC3P40938 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
RFC3P40938 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC14□□□□□ -0.17
RFC3P40938 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 AP000812.2-201ENST00000538934 718 ntBASIC14□□□□□ -0.17
RFC3P40938 AL583810.1-201ENST00000553344 1045 ntBASIC14□□□□□ -0.17
RFC3P40938 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC14□□□□□ -0.17
RFC3P40938 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC14□□□□□ -0.17
RFC3P40938 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC14□□□□□ -0.17
RFC3P40938 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14□□□□□ -0.17
RFC3P40938 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
RFC3P40938 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14□□□□□ -0.17
RFC3P40938 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14□□□□□ -0.17
RFC3P40938 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
RFC3P40938 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14□□□□□ -0.17
RFC3P40938 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
RFC3P40938 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
RFC3P40938 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFC3P40938 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
RFC3P40938 AP005117.1-202ENST00000581724 1908 ntBASIC14□□□□□ -0.17
RFC3P40938 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.99□□□□□ -0.17
RFC3P40938 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.99□□□□□ -0.17
RFC3P40938 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.99□□□□□ -0.17
RFC3P40938 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.99□□□□□ -0.17
RFC3P40938 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.99□□□□□ -0.17
RFC3P40938 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
RFC3P40938 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
RFC3P40938 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
RFC3P40938 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 BRWD1P1-201ENST00000401091 371 ntBASIC13.99□□□□□ -0.17
RFC3P40938 KLF2P2-201ENST00000416807 1039 ntBASIC13.99□□□□□ -0.17
RFC3P40938 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.99□□□□□ -0.17
RFC3P40938 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
RFC3P40938 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.99□□□□□ -0.17
RFC3P40938 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.99□□□□□ -0.17
RFC3P40938 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.99□□□□□ -0.17
RFC3P40938 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.99□□□□□ -0.17
RFC3P40938 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.99□□□□□ -0.17
RFC3P40938 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.99□□□□□ -0.17
RFC3P40938 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
RFC3P40938 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.99□□□□□ -0.17
RFC3P40938 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.99□□□□□ -0.17
RFC3P40938 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.99□□□□□ -0.17
RFC3P40938 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
RFC3P40938 AC148477.4-201ENST00000613430 1793 ntBASIC13.99□□□□□ -0.17
RFC3P40938 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFC3P40938 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.98□□□□□ -0.17
RFC3P40938 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
RFC3P40938 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
RFC3P40938 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.98□□□□□ -0.17
RFC3P40938 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
RFC3P40938 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
RFC3P40938 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
RFC3P40938 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
RFC3P40938 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
RFC3P40938 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms