Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
SPTA1P02549 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.75□□□□□ -0.21
SPTA1P02549 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 CTSL-202ENST00000342020 933 ntTSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 AC073150.1-201ENST00000450406 1084 ntBASIC13.74□□□□□ -0.21
SPTA1P02549 BUD31-205ENST00000456893 512 ntTSL 5 BASIC13.74□□□□□ -0.21
SPTA1P02549 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC13.74□□□□□ -0.21
SPTA1P02549 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 UBL5-208ENST00000593087 320 ntTSL 3 BASIC13.74□□□□□ -0.21
SPTA1P02549 AC020922.3-201ENST00000595064 547 ntBASIC13.74□□□□□ -0.21
SPTA1P02549 AC005632.3-201ENST00000605544 308 ntBASIC13.74□□□□□ -0.21
SPTA1P02549 MEG3_2.1-201ENST00000611456 105 ntBASIC13.74□□□□□ -0.21
SPTA1P02549 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.74□□□□□ -0.21
SPTA1P02549 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
SPTA1P02549 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.74□□□□□ -0.21
SPTA1P02549 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC13.74□□□□□ -0.21
SPTA1P02549 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 MIR4783-201ENST00000580343 82 ntBASIC13.74□□□□□ -0.21
SPTA1P02549 AC012044.1-201ENST00000603431 297 ntBASIC13.74□□□□□ -0.21
SPTA1P02549 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SPTA1P02549 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
SPTA1P02549 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
SPTA1P02549 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
SPTA1P02549 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SPTA1P02549 AC015909.3-201ENST00000572855 1794 ntBASIC13.74□□□□□ -0.21
SPTA1P02549 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC13.74□□□□□ -0.21
SPTA1P02549 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.73□□□□□ -0.21
SPTA1P02549 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 NOC2LP2-201ENST00000407594 1944 ntBASIC13.73□□□□□ -0.21
SPTA1P02549 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
SPTA1P02549 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
SPTA1P02549 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
SPTA1P02549 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC13.73□□□□□ -0.21
SPTA1P02549 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.73□□□□□ -0.21
SPTA1P02549 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC13.73□□□□□ -0.21
SPTA1P02549 RN7SL163P-201ENST00000583100 276 ntBASIC13.73□□□□□ -0.21
SPTA1P02549 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC13.73□□□□□ -0.21
SPTA1P02549 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC13.73□□□□□ -0.21
SPTA1P02549 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
SPTA1P02549 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
SPTA1P02549 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
SPTA1P02549 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC13.73□□□□□ -0.21
SPTA1P02549 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC13.73□□□□□ -0.21
SPTA1P02549 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
SPTA1P02549 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
SPTA1P02549 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms