Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL3A1P02461 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL3A1P02461 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL3A1P02461 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL3A1P02461 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC19.7■□□□□ 0.74
COL3A1P02461 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL3A1P02461 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
COL3A1P02461 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
COL3A1P02461 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL3A1P02461 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.7■□□□□ 0.74
COL3A1P02461 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL3A1P02461 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL3A1P02461 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL3A1P02461 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC19.7■□□□□ 0.74
COL3A1P02461 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC19.7■□□□□ 0.74
COL3A1P02461 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
COL3A1P02461 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC19.7■□□□□ 0.74
COL3A1P02461 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
COL3A1P02461 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL3A1P02461 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL3A1P02461 MARK2P5-201ENST00000507649 634 ntBASIC19.7■□□□□ 0.74
COL3A1P02461 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC19.7■□□□□ 0.74
COL3A1P02461 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL3A1P02461 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC19.7■□□□□ 0.74
COL3A1P02461 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC19.7■□□□□ 0.74
COL3A1P02461 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL3A1P02461 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
COL3A1P02461 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC19.7■□□□□ 0.74
COL3A1P02461 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC19.7■□□□□ 0.74
COL3A1P02461 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
COL3A1P02461 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL3A1P02461 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC19.7■□□□□ 0.74
COL3A1P02461 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 MTHFR-210ENST00000641407 2387 ntBASIC19.69■□□□□ 0.74
COL3A1P02461 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC19.69■□□□□ 0.74
COL3A1P02461 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
COL3A1P02461 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
COL3A1P02461 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC19.69■□□□□ 0.74
COL3A1P02461 CALR4P-201ENST00000431943 946 ntBASIC19.69■□□□□ 0.74
COL3A1P02461 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
COL3A1P02461 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC19.69■□□□□ 0.74
COL3A1P02461 IGHV3OR16-16-201ENST00000563644 343 ntBASIC19.69■□□□□ 0.74
COL3A1P02461 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
COL3A1P02461 AL023803.2-201ENST00000620080 638 ntBASIC19.69■□□□□ 0.74
COL3A1P02461 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC19.69■□□□□ 0.74
COL3A1P02461 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC19.69■□□□□ 0.74
COL3A1P02461 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC19.69■□□□□ 0.74
COL3A1P02461 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC19.69■□□□□ 0.74
COL3A1P02461 F10-203ENST00000409306 1450 ntTSL 3 BASIC19.69■□□□□ 0.74
COL3A1P02461 AC138028.6-201ENST00000616106 1482 ntBASIC19.69■□□□□ 0.74
COL3A1P02461 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
COL3A1P02461 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC19.69■□□□□ 0.74
COL3A1P02461 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL3A1P02461 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC19.68■□□□□ 0.74
COL3A1P02461 REEP1-202ENST00000453231 940 ntTSL 2 BASIC19.68■□□□□ 0.74
COL3A1P02461 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC19.68■□□□□ 0.74
COL3A1P02461 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC19.68■□□□□ 0.74
COL3A1P02461 AC009779.1-201ENST00000551138 283 ntBASIC19.68■□□□□ 0.74
COL3A1P02461 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC19.68■□□□□ 0.74
COL3A1P02461 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
COL3A1P02461 AC100827.2-201ENST00000563214 1194 ntBASIC19.68■□□□□ 0.74
COL3A1P02461 AC138649.2-201ENST00000615886 705 ntBASIC19.68■□□□□ 0.74
COL3A1P02461 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC19.68■□□□□ 0.74
COL3A1P02461 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC19.68■□□□□ 0.74
COL3A1P02461 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC19.68■□□□□ 0.74
COL3A1P02461 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL3A1P02461 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms