Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.194e-6■■■■■ 90.1
SF3B1O75533 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC13.78□□□□□ -0.24e-6■■■■■ 90.1
SF3B1O75533 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC13.52□□□□□ -0.244e-6■■■■■ 90.1
SF3B1O75533 DNMT3B-203ENST00000348286 4048 ntTSL 1 (best) BASIC13.13□□□□□ -0.314e-6■■■■■ 90.1
SF3B1O75533 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC22.67■■□□□ 1.223e-7■■■■■ 90.1
SF3B1O75533 KLF3-202ENST00000482150 517 ntTSL 215.6■□□□□ 0.093e-7■■■■■ 90.1
SF3B1O75533 LPIN2-203ENST00000584294 936 ntTSL 319.79■□□□□ 0.762e-6■■■■■ 90
SF3B1O75533 LPIN2-201ENST00000261596 6229 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.572e-6■■■■■ 90
SF3B1O75533 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.4■□□□□ 0.72e-6■■■■■ 90
SF3B1O75533 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.552e-6■■■■■ 90
SF3B1O75533 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.17■□□□□ 0.022e-6■■■■■ 90
SF3B1O75533 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC8.19□□□□□ -1.12e-6■■■■■ 90
SF3B1O75533 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.491e-6■■■■■ 90
SF3B1O75533 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.75■□□□□ 0.271e-6■■■■■ 90
SF3B1O75533 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.011e-6■■■■■ 90
SF3B1O75533 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.95□□□□□ -0.021e-6■■■■■ 90
SF3B1O75533 SMYD3-208ENST00000464398 540 ntTSL 38.72□□□□□ -1.012e-6■■■■■ 90
SF3B1O75533 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.07■■□□□ 1.64e-6■■■■■ 90
SF3B1O75533 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.39■□□□□ 0.694e-6■■■■■ 90
SF3B1O75533 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.674e-6■■■■■ 90
SF3B1O75533 MYO19-224ENST00000620943 654 ntTSL 29.6□□□□□ -0.871e-7■■■■■ 90
SF3B1O75533 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.155e-6■■■■■ 90
SF3B1O75533 DDHD1-209ENST00000557445 698 ntTSL 214.58□□□□□ -0.081e-6■■■■■ 89.9
SF3B1O75533 TMBIM1-211ENST00000440422 659 ntTSL 525.31■■□□□ 1.644e-7■■■■■ 89.9
SF3B1O75533 TMBIM1-213ENST00000444183 526 ntTSL 514.53□□□□□ -0.084e-7■■■■■ 89.9
SF3B1O75533 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.84□□□□□ -1.631e-6■■■■■ 89.9
SF3B1O75533 TTC7B-202ENST00000553948 630 ntTSL 535.53■■■■□ 3.282e-6■■■■■ 89.8
SF3B1O75533 R3HDM2-205ENST00000403821 3347 ntTSL 5 BASIC11.41□□□□□ -0.584e-6■■■■■ 89.8
SF3B1O75533 CTSB-225ENST00000532409 839 ntTSL 216.94■□□□□ 0.32e-6■■■■■ 89.8
SF3B1O75533 CTSB-203ENST00000420692 2230 ntTSL 216.65■□□□□ 0.262e-6■■■■■ 89.8
SF3B1O75533 CTSB-218ENST00000530624 430 ntTSL 515.76■□□□□ 0.112e-6■■■■■ 89.8
SF3B1O75533 CTSB-227ENST00000533110 399 ntTSL 510.33□□□□□ -0.762e-6■■■■■ 89.8
SF3B1O75533 CTSB-216ENST00000530290 498 ntTSL 36.29□□□□□ -1.42e-6■■■■■ 89.8
SF3B1O75533 PDIA5-207ENST00000489923 1651 ntTSL 1 (best)23.89■■□□□ 1.424e-6■■■■■ 89.8
SF3B1O75533 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.874e-6■■■■■ 89.8
SF3B1O75533 CABIN1-206ENST00000454754 1321 ntTSL 1 (best)22.06■■□□□ 1.123e-6■■■■■ 89.8
SF3B1O75533 CABIN1-205ENST00000445422 1472 ntTSL 221.03■□□□□ 0.963e-6■■■■■ 89.8
SF3B1O75533 CDK16-217ENST00000522234 1679 ntTSL 221.56■■□□□ 1.048e-8■■■■■ 89.8
SF3B1O75533 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.494e-6■■■■■ 89.8
SF3B1O75533 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC23.72■■□□□ 1.394e-6■■■■■ 89.8
SF3B1O75533 ADGRV1-208ENST00000509621 5211 ntTSL 1 (best)9.72□□□□□ -0.852e-6■■■■■ 89.7
SF3B1O75533 ADGRV1-231ENST00000640374 5401 ntTSL 57.99□□□□□ -1.132e-6■■■■■ 89.7
SF3B1O75533 ADGRV1-217ENST00000639431 611 ntTSL 55.41□□□□□ -1.542e-6■■■■■ 89.7
SF3B1O75533 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.08■□□□□ 0.973e-6■■■■■ 89.7
SF3B1O75533 S100PBP-215ENST00000531123 1688 ntTSL 519.6■□□□□ 0.734e-6■■■■■ 89.7
SF3B1O75533 S100PBP-201ENST00000356689 3583 ntTSL 1 (best)10.05□□□□□ -0.84e-6■■■■■ 89.7
SF3B1O75533 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.97■■■□□ 2.391e-6■■■■■ 89.7
SF3B1O75533 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.721e-6■■■■■ 89.7
SF3B1O75533 DCUN1D5-210ENST00000531571 1535 ntTSL 527.87■■■□□ 2.052e-6■■■■■ 89.7
SF3B1O75533 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.922e-6■■■■■ 89.7
SF3B1O75533 DCUN1D5-204ENST00000527576 790 ntTSL 525.03■■□□□ 1.62e-6■■■■■ 89.7
SF3B1O75533 DCUN1D5-205ENST00000527779 842 ntTSL 220.21■□□□□ 0.832e-6■■■■■ 89.7
SF3B1O75533 DCUN1D5-202ENST00000525420 651 ntTSL 317.74■□□□□ 0.432e-6■■■■■ 89.7
SF3B1O75533 DCUN1D5-207ENST00000529281 1310 ntTSL 217.15■□□□□ 0.342e-6■■■■■ 89.7
SF3B1O75533 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.84■□□□□ 0.292e-6■■■■■ 89.7
SF3B1O75533 DCUN1D5-208ENST00000529294 727 ntTSL 314.32□□□□□ -0.122e-6■■■■■ 89.7
SF3B1O75533 DCUN1D5-203ENST00000527260 808 ntTSL 53.41□□□□□ -1.862e-6■■■■■ 89.7
SF3B1O75533 ARHGAP24-211ENST00000512201 567 ntTSL 410.46□□□□□ -0.734e-6■■■■■ 89.7
SF3B1O75533 RBM28-202ENST00000415472 2251 ntTSL 2 BASIC11.93□□□□□ -0.52e-6■■■■■ 89.7
SF3B1O75533 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.282e-6■■■■■ 89.7
SF3B1O75533 CHD2-207ENST00000626782 2131 ntTSL 2 BASIC10.66□□□□□ -0.72e-6■■■■■ 89.6
SF3B1O75533 AC013394.1-202ENST00000630790 4499 ntTSL 29.03□□□□□ -0.962e-6■■■■■ 89.6
SF3B1O75533 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.47□□□□□ -1.372e-6■■■■■ 89.6
SF3B1O75533 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.36□□□□□ -1.392e-6■■■■■ 89.6
SF3B1O75533 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.432e-6■■■■■ 89.6
SF3B1O75533 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.19■■□□□ 1.142e-6■■■■■ 89.6
SF3B1O75533 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.812e-6■■■■■ 89.6
SF3B1O75533 PHF8-207ENST00000415025 687 ntTSL 318.76■□□□□ 0.598e-12■■■■■ 89.6
SF3B1O75533 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.552e-6■■■■■ 89.6
SF3B1O75533 DYRK1B-206ENST00000600611 657 ntTSL 517.5■□□□□ 0.392e-6■■■■■ 89.6
SF3B1O75533 PHF8-210ENST00000437224 555 ntTSL 416.76■□□□□ 0.278e-12■■■■■ 89.6
SF3B1O75533 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC15.53■□□□□ 0.082e-6■■■■■ 89.6
SF3B1O75533 PHF8-214ENST00000453905 534 ntTSL 415.48■□□□□ 0.078e-12■■■■■ 89.6
SF3B1O75533 RAB11FIP1-205ENST00000523182 2329 ntTSL 1 (best)14.95□□□□□ -0.025e-20■■■■■ 89.6
SF3B1O75533 RAPGEF2-205ENST00000505026 970 ntTSL 214.28□□□□□ -0.125e-17■■■■■ 89.6
SF3B1O75533 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC14.24□□□□□ -0.132e-6■■■■■ 89.6
SF3B1O75533 IFT172-216ENST00000507184 5565 ntTSL 511.41□□□□□ -0.581e-6■■■■■ 89.6
SF3B1O75533 RAB11FIP1-204ENST00000522774 3078 ntTSL 1 (best)11.06□□□□□ -0.645e-20■■■■■ 89.6
SF3B1O75533 IFT172-201ENST00000260570 5415 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.651e-6■■■■■ 89.6
SF3B1O75533 SET-204ENST00000372692 2850 ntTSL 1 (best) BASIC10.95□□□□□ -0.662e-6■■■■■ 89.6
SF3B1O75533 SET-205ENST00000409104 962 ntTSL 5 BASIC9.72□□□□□ -0.852e-6■■■■■ 89.6
SF3B1O75533 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.41e-6■■■■■ 89.6
SF3B1O75533 RAPGEF2-207ENST00000509891 537 ntTSL 26.2□□□□□ -1.425e-17■■■■■ 89.6
SF3B1O75533 DNAJC9-203ENST00000469143 362 ntTSL 35.03□□□□□ -1.62e-6■■■■■ 89.6
SF3B1O75533 WDR1-206ENST00000502962 1411 ntTSL 518.06■□□□□ 0.481e-6■■■■■ 89.6
SF3B1O75533 WDR1-218ENST00000515743 4482 ntTSL 512.43□□□□□ -0.421e-6■■■■■ 89.6
SF3B1O75533 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.014e-6■■■■■ 89.6
SF3B1O75533 IGF2BP2-201ENST00000346192 3291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.414e-6■■■■■ 89.6
SF3B1O75533 MAN1A2-201ENST00000356554 8576 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.866e-6■■■■■ 89.6
SF3B1O75533 CNOT2-207ENST00000547867 571 ntTSL 49.68□□□□□ -0.862e-6■■■■■ 89.5
SF3B1O75533 CNOT2-212ENST00000548599 643 ntTSL 57.2□□□□□ -1.262e-6■■■■■ 89.5
SF3B1O75533 CNOT2-234ENST00000551873 677 ntTSL 57.2□□□□□ -1.262e-6■■■■■ 89.5
SF3B1O75533 CNOT2-224ENST00000550194 747 ntTSL 57.2□□□□□ -1.262e-6■■■■■ 89.5
SF3B1O75533 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.82■■■□□ 2.364e-6■■■■■ 89.5
SF3B1O75533 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC27.18■■□□□ 1.944e-6■■■■■ 89.5
SF3B1O75533 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.86■□□□□ 0.934e-6■■■■■ 89.5
SF3B1O75533 TBCD-204ENST00000571316 1509 ntTSL 1 (best)18.49■□□□□ 0.552e-6■■■■■ 89.5
SF3B1O75533 UBE2G1-203ENST00000571980 984 ntTSL 523.42■■□□□ 1.345e-6■■■■■ 89.5
SF3B1O75533 UBE2G1-206ENST00000574633 863 ntTSL 222.32■■□□□ 1.165e-6■■■■■ 89.5
SF3B1O75533 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.49■□□□□ 0.555e-6■■■■■ 89.5
Retrieved 100 of 46,956 protein–RNA pairs in 1088.6 ms