Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC12.34□□□□□ -0.43
HMGB3O15347 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 PEG3-202ENST00000593695 4741 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 FAM225B-201ENST00000423546 5629 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 CICP11-201ENST00000434745 2827 ntBASIC12.33□□□□□ -0.43
HMGB3O15347 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
HMGB3O15347 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC12.33□□□□□ -0.43
HMGB3O15347 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
HMGB3O15347 SGSM1-201ENST00000400358 6643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
HMGB3O15347 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC12.33□□□□□ -0.43
HMGB3O15347 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC12.33□□□□□ -0.43
HMGB3O15347 ACVR2A-201ENST00000241416 5728 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
HMGB3O15347 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC12.33□□□□□ -0.44
HMGB3O15347 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.33□□□□□ -0.44
HMGB3O15347 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC12.33□□□□□ -0.44
HMGB3O15347 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC12.33□□□□□ -0.44
HMGB3O15347 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 MAST4-202ENST00000403625 10711 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
HMGB3O15347 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC12.33□□□□□ -0.44
HMGB3O15347 METTL16-201ENST00000263092 5711 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 CICP17-201ENST00000418553 2377 ntBASIC12.33□□□□□ -0.44
HMGB3O15347 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
HMGB3O15347 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 ACE3P-201ENST00000423435 1973 ntBASIC12.33□□□□□ -0.44
HMGB3O15347 ADAMTS20-201ENST00000389420 6076 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 AC073621.1-201ENST00000392730 636 ntBASIC12.33□□□□□ -0.44
HMGB3O15347 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC12.33□□□□□ -0.44
HMGB3O15347 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC12.33□□□□□ -0.44
HMGB3O15347 FAM185BP-201ENST00000443595 716 ntBASIC12.33□□□□□ -0.44
HMGB3O15347 AL513480.1-201ENST00000451731 511 ntBASIC12.33□□□□□ -0.44
HMGB3O15347 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC12.33□□□□□ -0.44
HMGB3O15347 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
HMGB3O15347 IGHV3-65-201ENST00000523210 341 ntBASIC12.33□□□□□ -0.44
HMGB3O15347 CFL1-202ENST00000524553 860 ntTSL 2 BASIC12.33□□□□□ -0.44
HMGB3O15347 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
HMGB3O15347 OR7E47P-204ENST00000575924 449 ntBASIC12.33□□□□□ -0.44
HMGB3O15347 PNMT-203ENST00000581428 677 ntTSL 2 BASIC12.33□□□□□ -0.44
HMGB3O15347 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC12.33□□□□□ -0.44
HMGB3O15347 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 AC066615.1-201ENST00000640911 628 ntBASIC12.33□□□□□ -0.44
HMGB3O15347 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
HMGB3O15347 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC12.33□□□□□ -0.44
HMGB3O15347 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC12.33□□□□□ -0.44
HMGB3O15347 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC12.33□□□□□ -0.44
HMGB3O15347 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 AL357673.2-201ENST00000623663 4969 ntTSL 5 BASIC12.33□□□□□ -0.44
HMGB3O15347 AC005562.1-201ENST00000583030 3219 ntBASIC12.33□□□□□ -0.44
HMGB3O15347 AL592490.1-201ENST00000409186 6347 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
HMGB3O15347 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 ARHGAP23P1-201ENST00000562773 1937 ntBASIC12.33□□□□□ -0.44
HMGB3O15347 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
HMGB3O15347 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HMGB3O15347 PLB1-205ENST00000422425 5115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HMGB3O15347 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC12.32□□□□□ -0.44
HMGB3O15347 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.32□□□□□ -0.44
HMGB3O15347 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 LUZP1-201ENST00000302291 8898 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
HMGB3O15347 CACNA1G-218ENST00000507510 7014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HMGB3O15347 FANCA-202ENST00000389301 5451 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms