Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 AC136604.1-202ENST00000425471 771 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 AC013553.1-201ENST00000560906 267 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 NEK4P3-201ENST00000604859 544 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 HELLS-212ENST00000630929 400 ntTSL 5 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 MT2A-202ENST00000561491 581 ntTSL 2 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 TMBIM7P-202ENST00000641474 1516 ntBASIC11.51□□□□□ -0.57
COL6A5A8TX70 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 AC104961.1-201ENST00000427605 771 ntBASIC11.51□□□□□ -0.57
COL6A5A8TX70 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 CSTP2-201ENST00000610599 398 ntBASIC11.51□□□□□ -0.57
COL6A5A8TX70 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
COL6A5A8TX70 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC11.51□□□□□ -0.57
COL6A5A8TX70 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 AC141586.5-201ENST00000624546 2050 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 EEF1DP5-201ENST00000431410 772 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 AC006529.1-201ENST00000459978 637 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 MIR6893-201ENST00000613458 69 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms