Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 AL607033.1-201ENST00000623900 1599 ntBASIC14.86□□□□□ -0.03
VPS4AQ9UN37 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 AC105021.1-202ENST00000570572 669 ntBASIC14.86□□□□□ -0.03
VPS4AQ9UN37 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 CHCHD2P3-201ENST00000603038 451 ntBASIC14.86□□□□□ -0.03
VPS4AQ9UN37 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 SNX12-206ENST00000622259 661 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 SBF1P1-201ENST00000444527 5631 ntBASIC14.85□□□□□ -0.03
VPS4AQ9UN37 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 LINC01101-201ENST00000622953 1884 ntBASIC14.85□□□□□ -0.03
VPS4AQ9UN37 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 MEP1AP4-201ENST00000423244 1087 ntBASIC14.85□□□□□ -0.03
VPS4AQ9UN37 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 KRT223P-202ENST00000449164 1292 ntBASIC14.85□□□□□ -0.03
VPS4AQ9UN37 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 AC055876.2-201ENST00000531834 546 ntBASIC14.85□□□□□ -0.03
VPS4AQ9UN37 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 WASH4P-201ENST00000564273 1246 ntBASIC14.85□□□□□ -0.03
VPS4AQ9UN37 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 AL512343.1-201ENST00000605837 169 ntBASIC14.85□□□□□ -0.03
VPS4AQ9UN37 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS4AQ9UN37 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms