Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.64■□□□□ 0.26
LIMA1Q9UHB6 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.64■□□□□ 0.26
LIMA1Q9UHB6 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 AL158070.2-201ENST00000623713 1621 ntBASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 TSSK5P-201ENST00000423978 907 ntBASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 AC009477.1-201ENST00000452936 217 ntBASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 AC025678.2-201ENST00000562061 970 ntBASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMA1Q9UHB6 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 AC015656.1-201ENST00000624209 3578 ntBASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 AL645937.2-201ENST00000396808 931 ntBASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 AL589987.1-201ENST00000453380 819 ntBASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 AC026410.3-201ENST00000514280 936 ntBASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms