Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 AL360270.3-201ENST00000609118 1348 ntBASIC14.44□□□□□ -0.1
VAPAQ9P0L0 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.44□□□□□ -0.1
VAPAQ9P0L0 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 AL512356.2-201ENST00000546955 174 ntBASIC14.44□□□□□ -0.1
VAPAQ9P0L0 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 TEX28P1-201ENST00000613479 1221 ntBASIC14.44□□□□□ -0.1
VAPAQ9P0L0 TEX28P2-201ENST00000617764 1221 ntBASIC14.44□□□□□ -0.1
VAPAQ9P0L0 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 AL109936.8-201ENST00000641772 604 ntBASIC14.44□□□□□ -0.1
VAPAQ9P0L0 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.44□□□□□ -0.1
VAPAQ9P0L0 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.44□□□□□ -0.1
VAPAQ9P0L0 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VAPAQ9P0L0 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 HLA-V-204ENST00000476601 1289 ntBASIC14.43□□□□□ -0.1
VAPAQ9P0L0 AC112482.1-201ENST00000492080 688 ntBASIC14.43□□□□□ -0.1
VAPAQ9P0L0 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 AC051619.7-201ENST00000568314 623 ntBASIC14.43□□□□□ -0.1
VAPAQ9P0L0 AC010327.4-202ENST00000591484 748 ntBASIC14.43□□□□□ -0.1
VAPAQ9P0L0 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 AC000095.1-201ENST00000603208 874 ntBASIC14.43□□□□□ -0.1
VAPAQ9P0L0 SPDYE12P-201ENST00000618416 771 ntBASIC14.43□□□□□ -0.1
VAPAQ9P0L0 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
VAPAQ9P0L0 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VAPAQ9P0L0 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VAPAQ9P0L0 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms