Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
MKS1Q9NXB0 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC15.04■□□□□ -0
MKS1Q9NXB0 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.04■□□□□ -0
MKS1Q9NXB0 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.04■□□□□ -0
MKS1Q9NXB0 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
MKS1Q9NXB0 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.04■□□□□ -0
MKS1Q9NXB0 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.04■□□□□ -0
MKS1Q9NXB0 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.04■□□□□ -0
MKS1Q9NXB0 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.04■□□□□ -0
MKS1Q9NXB0 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
MKS1Q9NXB0 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.04■□□□□ -0
MKS1Q9NXB0 TMEM198B-204ENST00000484016 896 ntBASIC15.04■□□□□ -0
MKS1Q9NXB0 KRT18P58-201ENST00000527480 1120 ntBASIC15.04■□□□□ -0
MKS1Q9NXB0 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
MKS1Q9NXB0 AL512356.2-201ENST00000546955 174 ntBASIC15.04■□□□□ -0
MKS1Q9NXB0 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.04■□□□□ -0
MKS1Q9NXB0 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.04■□□□□ -0
MKS1Q9NXB0 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.04■□□□□ -0
MKS1Q9NXB0 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.04■□□□□ -0
MKS1Q9NXB0 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.04■□□□□ -0
MKS1Q9NXB0 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 AC004835.2-201ENST00000603762 682 ntBASIC15.04■□□□□ -0
MKS1Q9NXB0 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.04■□□□□ -0
MKS1Q9NXB0 AC004461.2-201ENST00000629517 803 ntBASIC15.04■□□□□ -0
MKS1Q9NXB0 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
MKS1Q9NXB0 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.04■□□□□ -0
MKS1Q9NXB0 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.04■□□□□ -0
MKS1Q9NXB0 OR2I1P-210ENST00000642037 4691 ntBASIC15.04■□□□□ -0
MKS1Q9NXB0 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
MKS1Q9NXB0 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 INE2-201ENST00000630399 1874 ntBASIC15.03■□□□□ -0
MKS1Q9NXB0 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
MKS1Q9NXB0 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC15.03■□□□□ -0
MKS1Q9NXB0 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
MKS1Q9NXB0 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
MKS1Q9NXB0 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC15.03■□□□□ -0
MKS1Q9NXB0 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
MKS1Q9NXB0 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.03■□□□□ -0
MKS1Q9NXB0 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
MKS1Q9NXB0 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC15.03■□□□□ -0
MKS1Q9NXB0 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.03■□□□□ -0
MKS1Q9NXB0 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.03■□□□□ -0
MKS1Q9NXB0 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.03■□□□□ -0
MKS1Q9NXB0 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.03■□□□□ -0
MKS1Q9NXB0 AC023141.5-201ENST00000458585 616 ntBASIC15.03■□□□□ -0
MKS1Q9NXB0 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.03■□□□□ -0
MKS1Q9NXB0 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.03■□□□□ -0
MKS1Q9NXB0 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.03■□□□□ -0
MKS1Q9NXB0 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC15.03■□□□□ -0
MKS1Q9NXB0 AC051619.7-201ENST00000568314 623 ntBASIC15.03■□□□□ -0
MKS1Q9NXB0 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.03■□□□□ -0
MKS1Q9NXB0 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.03■□□□□ -0
MKS1Q9NXB0 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.03■□□□□ -0
MKS1Q9NXB0 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
MKS1Q9NXB0 AC015656.1-201ENST00000624209 3578 ntBASIC15.03■□□□□ -0
MKS1Q9NXB0 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
MKS1Q9NXB0 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC15.03■□□□□ -0
MKS1Q9NXB0 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC15.03■□□□□ -0
MKS1Q9NXB0 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.03■□□□□ -0
MKS1Q9NXB0 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
MKS1Q9NXB0 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms