Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 MTND6P24-201ENST00000440466 518 ntBASIC13.4□□□□□ -0.26
NKX3-1Q99801 TARDBPP1-201ENST00000442013 1203 ntBASIC13.4□□□□□ -0.26
NKX3-1Q99801 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 ALG1L8P-201ENST00000533887 760 ntBASIC13.4□□□□□ -0.26
NKX3-1Q99801 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 KRT8P23-201ENST00000560090 1207 ntBASIC13.4□□□□□ -0.26
NKX3-1Q99801 AC093520.2-201ENST00000561830 333 ntBASIC13.4□□□□□ -0.26
NKX3-1Q99801 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 AC022145.2-201ENST00000598203 171 ntBASIC13.4□□□□□ -0.26
NKX3-1Q99801 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
NKX3-1Q99801 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
NKX3-1Q99801 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
NKX3-1Q99801 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 AC074338.1-201ENST00000416825 156 ntBASIC13.39□□□□□ -0.27
NKX3-1Q99801 KRT18P32-201ENST00000424695 1287 ntBASIC13.39□□□□□ -0.27
NKX3-1Q99801 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 AP000344.2-201ENST00000512987 629 ntBASIC13.39□□□□□ -0.27
NKX3-1Q99801 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 AC004449.1-201ENST00000564240 433 ntBASIC13.39□□□□□ -0.27
NKX3-1Q99801 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 AC027601.5-201ENST00000624065 2482 ntBASIC13.39□□□□□ -0.27
NKX3-1Q99801 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.39□□□□□ -0.27
NKX3-1Q99801 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX3-1Q99801 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 AL353705.2-201ENST00000428243 662 ntBASIC13.38□□□□□ -0.27
NKX3-1Q99801 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms