Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 MBP-201ENST00000354542 575 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 HIST2H2BA-201ENST00000412169 381 ntBASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 BANF1P3-201ENST00000412556 261 ntBASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 AL807761.2-201ENST00000422849 729 ntBASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 AC093752.3-201ENST00000567343 901 ntBASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 RN7SL596P-201ENST00000582123 288 ntBASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 RNF146-211ENST00000609447 607 ntTSL 4 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 FO393412.1-201ENST00000619841 382 ntBASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TRIM43Q96BQ3 AL662844.4-201ENST00000606367 2838 ntBASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 AC092127.1-201ENST00000567093 3455 ntBASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 CICP12-201ENST00000455801 843 ntBASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 POLD4-208ENST00000532830 904 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 DNM1P51-201ENST00000558149 522 ntBASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 MIR5196-201ENST00000578146 115 ntBASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 LINC00431-202ENST00000636375 159 ntBASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM43Q96BQ3 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 IL9RP3-201ENST00000442856 1674 ntBASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
TRIM43Q96BQ3 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM43Q96BQ3 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM43Q96BQ3 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM43Q96BQ3 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM43Q96BQ3 AC090502.4-201ENST00000551714 1386 ntBASIC16.26■□□□□ 0.19
TRIM43Q96BQ3 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM43Q96BQ3 AC112504.1-201ENST00000623415 1841 ntBASIC16.26■□□□□ 0.19
TRIM43Q96BQ3 MTHFR-217ENST00000641820 1569 ntBASIC16.26■□□□□ 0.19
TRIM43Q96BQ3 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM43Q96BQ3 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM43Q96BQ3 KRT18P9-201ENST00000604826 1300 ntBASIC16.26■□□□□ 0.19
TRIM43Q96BQ3 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms