Protein–RNA interactions for Protein: Q8WWI5

SLC44A1, Choline transporter-like protein 1, humanhuman

Predictions only

Length 657 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A1Q8WWI5 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC44A1Q8WWI5 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC44A1Q8WWI5 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.31■□□□□ 0.04
SLC44A1Q8WWI5 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC44A1Q8WWI5 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC44A1Q8WWI5 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.31■□□□□ 0.04
SLC44A1Q8WWI5 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
SLC44A1Q8WWI5 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SLC44A1Q8WWI5 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC44A1Q8WWI5 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 AC051619.7-201ENST00000568314 623 ntBASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 TEX28P1-201ENST00000613479 1221 ntBASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 TEX28P2-201ENST00000617764 1221 ntBASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 AL691403.2-201ENST00000618460 490 ntBASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 AL157414.3-201ENST00000624276 1954 ntBASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC44A1Q8WWI5 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 AC018665.1-201ENST00000622927 1362 ntBASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 AL109936.8-201ENST00000641772 604 ntBASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 AL354702.1-201ENST00000442006 1960 ntBASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SLC44A1Q8WWI5 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.28■□□□□ 0.04
SLC44A1Q8WWI5 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms