Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
CSMD3Q7Z407 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 FTH1P22-201ENST00000456305 520 ntBASIC10.34□□□□□ -0.75
CSMD3Q7Z407 AC024293.1-201ENST00000467930 498 ntBASIC10.34□□□□□ -0.75
CSMD3Q7Z407 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 AC006058.4-201ENST00000624016 1670 ntBASIC10.34□□□□□ -0.75
CSMD3Q7Z407 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 AP000845.1-201ENST00000581677 2131 ntBASIC10.34□□□□□ -0.75
CSMD3Q7Z407 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC10.34□□□□□ -0.75
CSMD3Q7Z407 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 AC093826.1-201ENST00000508655 993 ntBASIC10.34□□□□□ -0.75
CSMD3Q7Z407 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 STK33-217ENST00000534493 1895 ntTSL 2 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 BID-213ENST00000615414 2236 ntTSL 5 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 AL807761.2-201ENST00000422849 729 ntBASIC10.34□□□□□ -0.75
CSMD3Q7Z407 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 AL645933.1-201ENST00000440087 609 ntBASIC10.34□□□□□ -0.75
CSMD3Q7Z407 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CSMD3Q7Z407 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 MBP-202ENST00000355994 2772 ntTSL 5 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 KRT17P4-201ENST00000429445 819 ntBASIC10.33□□□□□ -0.76
CSMD3Q7Z407 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 AC012073.1-201ENST00000606114 1108 ntBASIC10.33□□□□□ -0.76
CSMD3Q7Z407 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 USP4-203ENST00000415188 1454 ntTSL 3 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 KRT18P36-201ENST00000411618 1276 ntBASIC10.33□□□□□ -0.76
CSMD3Q7Z407 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 AC092638.2-201ENST00000441105 947 ntBASIC10.33□□□□□ -0.76
CSMD3Q7Z407 FAM86KP-201ENST00000509817 987 ntBASIC10.33□□□□□ -0.76
CSMD3Q7Z407 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms