Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC12.4□□□□□ -0.42
LMO4P61968 DPM3-202ENST00000368399 517 ntBASIC12.4□□□□□ -0.42
LMO4P61968 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 TUBB8P8-201ENST00000458717 1058 ntBASIC12.4□□□□□ -0.42
LMO4P61968 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC12.4□□□□□ -0.42
LMO4P61968 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC12.4□□□□□ -0.42
LMO4P61968 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC12.4□□□□□ -0.42
LMO4P61968 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC12.4□□□□□ -0.42
LMO4P61968 NDUFV2P1-201ENST00000596415 907 ntBASIC12.4□□□□□ -0.42
LMO4P61968 BNIP3P13-201ENST00000599968 566 ntBASIC12.4□□□□□ -0.42
LMO4P61968 AL021578.1-201ENST00000613646 709 ntBASIC12.4□□□□□ -0.42
LMO4P61968 AL162426.1-201ENST00000624141 743 ntBASIC12.4□□□□□ -0.42
LMO4P61968 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC12.4□□□□□ -0.42
LMO4P61968 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC12.4□□□□□ -0.42
LMO4P61968 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
LMO4P61968 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC12.4□□□□□ -0.42
LMO4P61968 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC12.4□□□□□ -0.42
LMO4P61968 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC12.4□□□□□ -0.42
LMO4P61968 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.42
LMO4P61968 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LMO4P61968 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC12.4□□□□□ -0.43
LMO4P61968 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
LMO4P61968 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
LMO4P61968 SHC1P1-201ENST00000425230 1745 ntBASIC12.4□□□□□ -0.43
LMO4P61968 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
LMO4P61968 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.39□□□□□ -0.43
LMO4P61968 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
LMO4P61968 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC12.39□□□□□ -0.43
LMO4P61968 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
LMO4P61968 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC12.39□□□□□ -0.43
LMO4P61968 AC010141.1-201ENST00000411585 623 ntBASIC12.39□□□□□ -0.43
LMO4P61968 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC12.39□□□□□ -0.43
LMO4P61968 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC12.39□□□□□ -0.43
LMO4P61968 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC12.39□□□□□ -0.43
LMO4P61968 RNMTL1P1-201ENST00000454103 560 ntBASIC12.39□□□□□ -0.43
LMO4P61968 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC12.39□□□□□ -0.43
LMO4P61968 AC005740.2-201ENST00000511085 419 ntBASIC12.39□□□□□ -0.43
LMO4P61968 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC12.39□□□□□ -0.43
LMO4P61968 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 DUX4L46-201ENST00000566845 751 ntBASIC12.39□□□□□ -0.43
LMO4P61968 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC12.39□□□□□ -0.43
LMO4P61968 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 AC009955.4-201ENST00000597192 544 ntBASIC12.39□□□□□ -0.43
LMO4P61968 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC12.39□□□□□ -0.43
LMO4P61968 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC12.39□□□□□ -0.43
LMO4P61968 PPA1-206ENST00000625364 644 ntTSL 5 BASIC12.39□□□□□ -0.43
LMO4P61968 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC12.39□□□□□ -0.43
LMO4P61968 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
LMO4P61968 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
LMO4P61968 WASH3P-207ENST00000560956 1394 ntBASIC12.39□□□□□ -0.43
LMO4P61968 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC12.39□□□□□ -0.43
LMO4P61968 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC12.39□□□□□ -0.43
LMO4P61968 REXO1L2P-201ENST00000425429 2069 ntBASIC12.39□□□□□ -0.43
LMO4P61968 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC12.39□□□□□ -0.43
LMO4P61968 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
LMO4P61968 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
LMO4P61968 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
LMO4P61968 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.38□□□□□ -0.43
LMO4P61968 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
LMO4P61968 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 TUBBP5-203ENST00000508529 1334 ntBASIC12.38□□□□□ -0.43
LMO4P61968 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms