Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SRP54P61011 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
SRP54P61011 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
SRP54P61011 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SRP54P61011 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.08■□□□□ 0.01
SRP54P61011 LRRC59-203ENST00000576448 1531 ntBASIC15.08■□□□□ 0.01
SRP54P61011 SBF1P1-201ENST00000444527 5631 ntBASIC15.08■□□□□ 0.01
SRP54P61011 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
SRP54P61011 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
SRP54P61011 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.08■□□□□ 0
SRP54P61011 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.08■□□□□ 0
SRP54P61011 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.08■□□□□ 0
SRP54P61011 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
SRP54P61011 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.08■□□□□ 0
SRP54P61011 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SRP54P61011 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.08■□□□□ 0
SRP54P61011 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
SRP54P61011 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
SRP54P61011 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
SRP54P61011 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SRP54P61011 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC15.08■□□□□ 0
SRP54P61011 AC006001.1-201ENST00000325130 474 ntBASIC15.08■□□□□ 0
SRP54P61011 FAM86MP-201ENST00000340703 885 ntBASIC15.08■□□□□ 0
SRP54P61011 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.08■□□□□ 0
SRP54P61011 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
SRP54P61011 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
SRP54P61011 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.08■□□□□ 0
SRP54P61011 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.08■□□□□ 0
SRP54P61011 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.08■□□□□ 0
SRP54P61011 AL355994.2-201ENST00000447882 704 ntBASIC15.08■□□□□ 0
SRP54P61011 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
SRP54P61011 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.08■□□□□ 0
SRP54P61011 AC078819.1-201ENST00000547454 765 ntBASIC15.08■□□□□ 0
SRP54P61011 AC012085.1-201ENST00000548270 765 ntBASIC15.08■□□□□ 0
SRP54P61011 AC023310.1-201ENST00000554836 735 ntBASIC15.08■□□□□ 0
SRP54P61011 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.08■□□□□ 0
SRP54P61011 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC15.08■□□□□ 0
SRP54P61011 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.08■□□□□ 0
SRP54P61011 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC15.08■□□□□ 0
SRP54P61011 SAMD11P1-201ENST00000571429 661 ntBASIC15.08■□□□□ 0
SRP54P61011 AC010328.2-201ENST00000597698 1111 ntBASIC15.08■□□□□ 0
SRP54P61011 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.08■□□□□ 0
SRP54P61011 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.08■□□□□ 0
SRP54P61011 AL365203.3-201ENST00000609742 2057 ntBASIC15.08■□□□□ 0
SRP54P61011 TUBB1P2-201ENST00000422712 1306 ntBASIC15.08■□□□□ 0
SRP54P61011 TUBB1P1-201ENST00000503144 1300 ntBASIC15.08■□□□□ 0
SRP54P61011 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SRP54P61011 AC105917.1-201ENST00000506637 2539 ntBASIC15.08■□□□□ 0
SRP54P61011 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SRP54P61011 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SRP54P61011 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.08■□□□□ 0
SRP54P61011 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.08■□□□□ 0
SRP54P61011 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.08■□□□□ 0
SRP54P61011 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.08■□□□□ 0
SRP54P61011 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.07■□□□□ 0
SRP54P61011 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
SRP54P61011 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.07■□□□□ 0
SRP54P61011 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.07■□□□□ 0
SRP54P61011 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.07■□□□□ 0
SRP54P61011 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC15.07■□□□□ 0
SRP54P61011 BRWD1P1-201ENST00000401091 371 ntBASIC15.07■□□□□ 0
SRP54P61011 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.07■□□□□ 0
SRP54P61011 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.07■□□□□ 0
SRP54P61011 ACTBP11-201ENST00000436287 1126 ntBASIC15.07■□□□□ 0
SRP54P61011 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SRP54P61011 RNA5SP486-201ENST00000515961 83 ntBASIC15.07■□□□□ 0
SRP54P61011 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.07■□□□□ 0
SRP54P61011 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.07■□□□□ 0
SRP54P61011 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.07■□□□□ 0
SRP54P61011 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.07■□□□□ 0
SRP54P61011 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.07■□□□□ 0
SRP54P61011 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.07■□□□□ 0
SRP54P61011 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC15.07■□□□□ 0
SRP54P61011 RN7SL219P-201ENST00000582872 296 ntBASIC15.07■□□□□ 0
SRP54P61011 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.07■□□□□ 0
SRP54P61011 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.07■□□□□ 0
SRP54P61011 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.07■□□□□ 0
SRP54P61011 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.07■□□□□ 0
SRP54P61011 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
SRP54P61011 AC105250.1-201ENST00000509378 2057 ntBASIC15.07■□□□□ 0
SRP54P61011 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.07■□□□□ 0
SRP54P61011 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SRP54P61011 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms