Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CLRN1P58418 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CLRN1P58418 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.67□□□□□ -0.22
CLRN1P58418 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC13.67□□□□□ -0.22
CLRN1P58418 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC13.67□□□□□ -0.22
CLRN1P58418 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC13.67□□□□□ -0.22
CLRN1P58418 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.67□□□□□ -0.22
CLRN1P58418 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 GNAQP1-201ENST00000444815 1067 ntBASIC13.67□□□□□ -0.22
CLRN1P58418 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC13.67□□□□□ -0.22
CLRN1P58418 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.67□□□□□ -0.22
CLRN1P58418 RN7SL399P-201ENST00000471648 279 ntBASIC13.67□□□□□ -0.22
CLRN1P58418 AC093004.1-201ENST00000508850 424 ntBASIC13.67□□□□□ -0.22
CLRN1P58418 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC13.67□□□□□ -0.22
CLRN1P58418 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC13.67□□□□□ -0.22
CLRN1P58418 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC13.67□□□□□ -0.22
CLRN1P58418 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
CLRN1P58418 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC13.67□□□□□ -0.22
CLRN1P58418 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC13.67□□□□□ -0.22
CLRN1P58418 AL049840.4-201ENST00000602422 811 ntBASIC13.67□□□□□ -0.22
CLRN1P58418 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.67□□□□□ -0.22
CLRN1P58418 AL391069.4-201ENST00000609583 481 ntBASIC13.67□□□□□ -0.22
CLRN1P58418 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.67□□□□□ -0.22
CLRN1P58418 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.67□□□□□ -0.22
CLRN1P58418 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.67□□□□□ -0.22
CLRN1P58418 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CLRN1P58418 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.67□□□□□ -0.22
CLRN1P58418 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CLRN1P58418 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CLRN1P58418 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CLRN1P58418 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.66□□□□□ -0.22
CLRN1P58418 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC13.66□□□□□ -0.22
CLRN1P58418 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CLRN1P58418 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CLRN1P58418 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CLRN1P58418 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.66□□□□□ -0.22
CLRN1P58418 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CLRN1P58418 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC13.66□□□□□ -0.22
CLRN1P58418 TMPRSS11CP-201ENST00000453277 683 ntBASIC13.66□□□□□ -0.22
CLRN1P58418 CD81-207ENST00000481687 890 ntTSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC13.66□□□□□ -0.22
CLRN1P58418 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.66□□□□□ -0.22
CLRN1P58418 AC055876.2-201ENST00000531834 546 ntBASIC13.66□□□□□ -0.22
CLRN1P58418 RRP7BP-205ENST00000566851 833 ntBASIC13.66□□□□□ -0.22
CLRN1P58418 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC13.66□□□□□ -0.22
CLRN1P58418 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 AJ011932.1-201ENST00000621707 465 ntBASIC13.66□□□□□ -0.22
CLRN1P58418 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CLRN1P58418 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CLRN1P58418 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.66□□□□□ -0.22
CLRN1P58418 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CLRN1P58418 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 AC068418.2-201ENST00000577309 3703 ntBASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms