Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGCS2P54868 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.42■□□□□ 0.38
HMGCS2P54868 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGCS2P54868 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGCS2P54868 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HMGCS2P54868 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HMGCS2P54868 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGCS2P54868 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGCS2P54868 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGCS2P54868 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
HMGCS2P54868 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGCS2P54868 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 HNRNPA1P41-201ENST00000397777 928 ntBASIC17.41■□□□□ 0.38
HMGCS2P54868 PARVG-202ENST00000415224 999 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGCS2P54868 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGCS2P54868 KLF2P1-201ENST00000447438 1042 ntBASIC17.41■□□□□ 0.38
HMGCS2P54868 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGCS2P54868 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGCS2P54868 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGCS2P54868 CENPX-208ENST00000584347 799 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGCS2P54868 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGCS2P54868 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 HYMAI-201ENST00000635591 3347 ntBASIC17.41■□□□□ 0.38
HMGCS2P54868 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HMGCS2P54868 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HMGCS2P54868 AL391005.1-201ENST00000623953 2435 ntBASIC17.41■□□□□ 0.38
HMGCS2P54868 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGCS2P54868 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGCS2P54868 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HMGCS2P54868 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGCS2P54868 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCS2P54868 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGCS2P54868 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.4■□□□□ 0.38
HMGCS2P54868 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
HMGCS2P54868 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGCS2P54868 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.4■□□□□ 0.38
HMGCS2P54868 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGCS2P54868 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC17.4■□□□□ 0.38
HMGCS2P54868 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 UFM1-202ENST00000379649 846 ntTSL 4 BASIC17.4■□□□□ 0.38
HMGCS2P54868 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGCS2P54868 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC17.4■□□□□ 0.38
HMGCS2P54868 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGCS2P54868 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC17.4■□□□□ 0.38
HMGCS2P54868 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC17.4■□□□□ 0.38
HMGCS2P54868 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGCS2P54868 AC103988.2-201ENST00000561804 725 ntBASIC17.4■□□□□ 0.38
HMGCS2P54868 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC17.4■□□□□ 0.38
HMGCS2P54868 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
HMGCS2P54868 AC020922.3-201ENST00000595064 547 ntBASIC17.4■□□□□ 0.38
HMGCS2P54868 AC132192.2-201ENST00000596206 1147 ntBASIC17.4■□□□□ 0.38
HMGCS2P54868 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
HMGCS2P54868 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.4■□□□□ 0.38
HMGCS2P54868 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGCS2P54868 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 AL138725.1-201ENST00000407347 1314 ntBASIC17.4■□□□□ 0.38
HMGCS2P54868 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGCS2P54868 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGCS2P54868 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
HMGCS2P54868 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HMGCS2P54868 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms