Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC138932.2-201ENST00000548268 1459 ntBASIC14.63□□□□□ -0.07
MSX2P35548 AC126755.4-201ENST00000549796 1459 ntBASIC14.63□□□□□ -0.07
MSX2P35548 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
MSX2P35548 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.62□□□□□ -0.07
MSX2P35548 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
MSX2P35548 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.62□□□□□ -0.07
MSX2P35548 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
MSX2P35548 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
MSX2P35548 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.62□□□□□ -0.07
MSX2P35548 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
MSX2P35548 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.62□□□□□ -0.07
MSX2P35548 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
MSX2P35548 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.62□□□□□ -0.07
MSX2P35548 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC14.62□□□□□ -0.07
MSX2P35548 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC14.62□□□□□ -0.07
MSX2P35548 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.62□□□□□ -0.07
MSX2P35548 KRT18P56-201ENST00000507275 550 ntBASIC14.62□□□□□ -0.07
MSX2P35548 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC14.62□□□□□ -0.07
MSX2P35548 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
MSX2P35548 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC14.62□□□□□ -0.07
MSX2P35548 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC14.62□□□□□ -0.07
MSX2P35548 AL135744.1-201ENST00000565098 629 ntBASIC14.62□□□□□ -0.07
MSX2P35548 LITAF-211ENST00000572255 516 ntTSL 4 BASIC14.62□□□□□ -0.07
MSX2P35548 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
MSX2P35548 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 AC064836.3-201ENST00000607928 673 ntBASIC14.62□□□□□ -0.07
MSX2P35548 AL031008.1-201ENST00000619963 541 ntBASIC14.62□□□□□ -0.07
MSX2P35548 AL513190.1-201ENST00000621254 727 ntBASIC14.62□□□□□ -0.07
MSX2P35548 AL691432.3-201ENST00000621860 400 ntBASIC14.62□□□□□ -0.07
MSX2P35548 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC14.62□□□□□ -0.07
MSX2P35548 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.62□□□□□ -0.07
MSX2P35548 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14.62□□□□□ -0.07
MSX2P35548 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.62□□□□□ -0.07
MSX2P35548 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.62□□□□□ -0.07
MSX2P35548 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.62□□□□□ -0.07
MSX2P35548 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.62□□□□□ -0.07
MSX2P35548 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.62□□□□□ -0.07
MSX2P35548 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
MSX2P35548 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
MSX2P35548 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
MSX2P35548 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.61□□□□□ -0.07
MSX2P35548 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.61□□□□□ -0.07
MSX2P35548 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.61□□□□□ -0.07
MSX2P35548 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.61□□□□□ -0.07
MSX2P35548 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC14.61□□□□□ -0.07
MSX2P35548 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
MSX2P35548 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC14.61□□□□□ -0.07
MSX2P35548 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
MSX2P35548 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC14.61□□□□□ -0.07
MSX2P35548 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 AC007967.2-201ENST00000432613 625 ntBASIC14.61□□□□□ -0.07
MSX2P35548 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
MSX2P35548 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.61□□□□□ -0.07
MSX2P35548 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.61□□□□□ -0.07
MSX2P35548 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.61□□□□□ -0.07
MSX2P35548 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
MSX2P35548 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC14.61□□□□□ -0.07
MSX2P35548 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC14.61□□□□□ -0.07
MSX2P35548 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC14.61□□□□□ -0.07
MSX2P35548 CALM3-211ENST00000598871 561 ntTSL 4 BASIC14.61□□□□□ -0.07
MSX2P35548 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
MSX2P35548 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.61□□□□□ -0.07
MSX2P35548 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
MSX2P35548 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.61□□□□□ -0.07
MSX2P35548 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.61□□□□□ -0.07
MSX2P35548 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.61□□□□□ -0.07
MSX2P35548 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.61□□□□□ -0.07
MSX2P35548 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms